View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12661_low_44 (Length: 238)
Name: NF12661_low_44
Description: NF12661
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12661_low_44 |
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Alignment Details
Target: chr4 (Bit Score: 183; Significance: 4e-99; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 56161947 - 56162182
Alignment:
| Q |
1 |
ccatcacagtcaacacctgtaatttcttacaaatcatagatatttttaaatttccaggttggactaaatacattttcaattttgcatttaagatcgacaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
56161947 |
ccatcacagtcaacacctgtaatttcttacaaatcatagatatttttaaatttccaggttggactaaatacattttcaattttgcatttaagatcgacaa |
56162046 |
T |
|
| Q |
101 |
taatcttggtctaaaacattagctggacaaaatac------------atattggactttttgttataagctcttcatttctattggagtttgaaacctta |
188 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
56162047 |
taatcttggtctaaaacattagctggacaaaatacatattcacatttatattggactttttgttataagctcttcatttctattggagtttgaaaactta |
56162146 |
T |
|
| Q |
189 |
accatctccatagattcgttatcatattttgttagt |
224 |
Q |
| |
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|||||||| |||||||| |||||||||||||||||| |
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| T |
56162147 |
accatctctatagattcattatcatattttgttagt |
56162182 |
T |
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