View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12661_low_45 (Length: 237)
Name: NF12661_low_45
Description: NF12661
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12661_low_45 |
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| [»] scaffold0018 (1 HSPs) |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: scaffold0018 (Bit Score: 208; Significance: 1e-114; HSPs: 1)
Name: scaffold0018
Description:
Target: scaffold0018; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 14 - 237
Target Start/End: Original strand, 170105 - 170328
Alignment:
| Q |
14 |
caagtttcattgatagtctaactttacgatgtcatggtttcatgattgctgatgaatatgtaagatattatgaccaaagttcattcataagaacaaaatg |
113 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
170105 |
caagtttcattgatattctaactttacgatgtcatggtttcatgattgctgatgaatatgtaagatattatgaccaaagttcattcataagaacaaaatg |
170204 |
T |
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| Q |
114 |
gtggcagacaaggatgaaactggatccatataatagaactgcaagggttgcagagaaactagcatacactctaattgctaacaaactaactgcaatcgca |
213 |
Q |
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| T |
170205 |
gtggcagagaaggatgaaactggatccatataatagaactgaaagggttgcagagaaactagcatacactctaattgctaacaaactaactgcaatcgca |
170304 |
T |
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| Q |
214 |
agctatcacatagctatccgattc |
237 |
Q |
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| T |
170305 |
agttatcacatagctatccgattc |
170328 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 196; Significance: 1e-107; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 14 - 237
Target Start/End: Complemental strand, 31053144 - 31052921
Alignment:
| Q |
14 |
caagtttcattgatagtctaactttacgatgtcatggtttcatgattgctgatgaatatgtaagatattatgaccaaagttcattcataagaacaaaatg |
113 |
Q |
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| T |
31053144 |
caagtctcattgatattctaactttacgatgtcatggtttcatgattgctgatcaatatgtaagatattatgaccaaaattcattcataagaacaaaatg |
31053045 |
T |
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| Q |
114 |
gtggcagacaaggatgaaactggatccatataatagaactgcaagggttgcagagaaactagcatacactctaattgctaacaaactaactgcaatcgca |
213 |
Q |
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| T |
31053044 |
gtggcagagaaggatgaaactggatccatataatagaactgaaagggttgcagagaaactagcatacactctaattgctaacaaactaactgcaatcgta |
31052945 |
T |
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| Q |
214 |
agctatcacatagctatccgattc |
237 |
Q |
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| T |
31052944 |
agctatcacatagctatccgattc |
31052921 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 44; Significance: 4e-16; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 14 - 132
Target Start/End: Original strand, 5345223 - 5345344
Alignment:
| Q |
14 |
caagtttcattgatagtctaactttacgatgtcatggtttcatgattgctgatgaa---tatgtaagatattatgaccaaagttcattcataagaacaaa |
110 |
Q |
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| T |
5345223 |
caagtttgattgatattctaacttaatgttgtcatggtttcatgatccgtgattaaaaatatgtaacataacatgaccaaagttcattcataagaaataa |
5345322 |
T |
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| Q |
111 |
atggtggcagacaaggatgaaa |
132 |
Q |
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| T |
5345323 |
atggtagcagagaaggatgaaa |
5345344 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 82 - 132
Target Start/End: Complemental strand, 5380171 - 5380121
Alignment:
| Q |
82 |
tatgaccaaagttcattcataagaacaaaatggtggcagacaaggatgaaa |
132 |
Q |
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| T |
5380171 |
tatgaccaaagttcattcataagaacaagatgttagcagagaaggatgaaa |
5380121 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 14 - 145
Target Start/End: Complemental strand, 5364302 - 5364166
Alignment:
| Q |
14 |
caagtttcattgatagtctaactttacgatgtcatggt---ttcatgattgctgatgaa---tatgtaagatattatgaccaaagttcattcataagaac |
107 |
Q |
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| T |
5364302 |
caagtttgattgatattctaactttatgttgtcatggtggtttcatgattcgtgattaaaaatatgtaacataatataac-aaagttcatttataagaac |
5364204 |
T |
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| Q |
108 |
aaaatggtggcagacaaggatgaaactggatccatata |
145 |
Q |
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| T |
5364203 |
aaaattgtagcagaaaaggatgaaattgaattcatata |
5364166 |
T |
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