View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12661_low_46 (Length: 226)
Name: NF12661_low_46
Description: NF12661
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12661_low_46 |
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| [»] chr2 (1 HSPs) |
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| [»] chr6 (1 HSPs) |
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| [»] chr8 (1 HSPs) |
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| [»] scaffold0354 (1 HSPs) |
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| [»] scaffold0068 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 194; Significance: 1e-105; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 1 - 226
Target Start/End: Complemental strand, 33347850 - 33347625
Alignment:
| Q |
1 |
taatccaatttatccatctatcagaaaaacccatttttatcataacccttttcagataactccaatcaattttgtcatacgctttacttatatccagctt |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||| || ||||| |
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| T |
33347850 |
taatccaatttatccatctatcagaaaaacccatttttatcataacctttttcagataactccaatcaattatgtcatacgctttacttatgtcaagctt |
33347751 |
T |
|
| Q |
101 |
aagagcaacatctcccaatatacctttgactttcgacttcatataatgaatgatctctatggctgccatagcattatctaggacagatcgacctgcaaca |
200 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| | |||| |
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| T |
33347750 |
aagagcaacatctcccaatgtacctttgactttcgacttcatataatgaatgatctctatggctgccatagcattatctaggatagatcgacccggaaca |
33347651 |
T |
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| Q |
201 |
aatgcagattgactatcagaaatgca |
226 |
Q |
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|||||||||||||||||||||||||| |
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| T |
33347650 |
aatgcagattgactatcagaaatgca |
33347625 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 190; Significance: 1e-103; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 1 - 226
Target Start/End: Original strand, 19111954 - 19112179
Alignment:
| Q |
1 |
taatccaatttatccatctatcagaaaaacccatttttatcataacccttttcagataactccaatcaattttgtcatacgctttacttatatccagctt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||| |||||||||||| ||||| |
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| T |
19111954 |
taatccaatttatccatctatcagaaaaacccatttttatcataacccttttcaaataactccaatcaattatgtcatacgttttacttatatcaagctt |
19112053 |
T |
|
| Q |
101 |
aagagcaacatctcccaatatacctttgactttcgacttcatataatgaatgatctctatggctgccatagcattatctaggacagatcgacctgcaaca |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||| ||||||||| | |||| |
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| T |
19112054 |
aagagcaacatctcccaatatacctttgactttcgactccatataatgaatgatctctatggcttccatagcattatctaggatagatcgacccggaaca |
19112153 |
T |
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| Q |
201 |
aatgcagattgactatcagaaatgca |
226 |
Q |
| |
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|||||||||||||||||||||||||| |
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| T |
19112154 |
aatgcagattgactatcagaaatgca |
19112179 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 182; Significance: 2e-98; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 1 - 226
Target Start/End: Original strand, 26383532 - 26383757
Alignment:
| Q |
1 |
taatccaatttatccatctatcagaaaaacccatttttatcataacccttttcagataactccaatcaattttgtcatacgctttacttatatccagctt |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||| |
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| T |
26383532 |
taatccaatttatccatctatcagaaaaacccatttttatcataacccttttcagataactccaatcaattctgtcatacgctttacttatatcaagctt |
26383631 |
T |
|
| Q |
101 |
aagagcaacatctcccaatatacctttgactttcgacttcatataatgaatgatctctatggctgccatagcattatctaggacagatcgacctgcaaca |
200 |
Q |
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||||| ||||||||||||| || |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| | |||| |
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| T |
26383632 |
aagagaaacatctcccaatgtaactttgagtttcgacttcatataatgaatgatctctatggctgccatagcattatctaggatagatcgacccggaaca |
26383731 |
T |
|
| Q |
201 |
aatgcagattgactatcagaaatgca |
226 |
Q |
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|||||| ||||||||| ||||||||| |
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| T |
26383732 |
aatgcaaattgactattagaaatgca |
26383757 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 46; Significance: 2e-17; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 73 - 178
Target Start/End: Complemental strand, 48211307 - 48211202
Alignment:
| Q |
73 |
tgtcatacgctttacttatatccagcttaagagcaacatctcccaatatacctttgactttcgacttcatataatgaatgatctctatggctgccatagc |
172 |
Q |
| |
|
||||||| |||||||| ||||| ||||||||||| || ||||||| ||||||||||||| |||||||| |||||||||||| ||||| |||||| | |
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| T |
48211307 |
tgtcataagctttactaatatcaagcttaagagccacttctcccacattacctttgacttttatcttcatatgatgaatgatctcaatggcagccataac |
48211208 |
T |
|
| Q |
173 |
attatc |
178 |
Q |
| |
|
|||||| |
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|
| T |
48211207 |
attatc |
48211202 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 73 - 177
Target Start/End: Original strand, 46390140 - 46390244
Alignment:
| Q |
73 |
tgtcatacgctttacttatatccagcttaagagcaacatctcccaatatacctttgactttcgacttcatataatgaatgatctctatggctgccatagc |
172 |
Q |
| |
|
||||||| |||||||| ||||| ||||||||||| || ||||||| ||||||||||||| |||||||| |||||||||||| ||||| ||||| | |
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| T |
46390140 |
tgtcataagctttactaatatcaagcttaagagccacttctcccacattacctttgacttttatcttcatatgatgaatgatctcaatggcaaccataac |
46390239 |
T |
|
| Q |
173 |
attat |
177 |
Q |
| |
|
||||| |
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|
| T |
46390240 |
attat |
46390244 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0354 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0354
Description:
Target: scaffold0354; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 162 - 226
Target Start/End: Original strand, 30 - 94
Alignment:
| Q |
162 |
gctgccatagcattatctaggacagatcgacctgcaacaaatgcagattgactatcagaaatgca |
226 |
Q |
| |
|
|||||||||||||||||||||| ||||||||| | ||||||||||| ||||| ||||||||||| |
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| T |
30 |
gctgccatagcattatctaggatagatcgacccggaacaaatgcaggttgacagtcagaaatgca |
94 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0068 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0068
Description:
Target: scaffold0068; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 73 - 178
Target Start/End: Original strand, 11762 - 11867
Alignment:
| Q |
73 |
tgtcatacgctttacttatatccagcttaagagcaacatctcccaatatacctttgactttcgacttcatataatgaatgatctctatggctgccatagc |
172 |
Q |
| |
|
||||||| |||||||| ||||| ||||||||||| || ||||||| ||||||||||||| ||||||| || ||||||||| ||||| ||||||| |
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|
| T |
11762 |
tgtcataagctttactaatatcaagcttaagagccacttctcccacattacctttgacttttatcttcatacgattaatgatctcaatggcaaccatagc |
11861 |
T |
|
| Q |
173 |
attatc |
178 |
Q |
| |
|
|||||| |
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|
| T |
11862 |
attatc |
11867 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 73 - 178
Target Start/End: Complemental strand, 21702148 - 21702043
Alignment:
| Q |
73 |
tgtcatacgctttacttatatccagcttaagagcaacatctcccaatatacctttgactttcgacttcatataatgaatgatctctatggctgccatagc |
172 |
Q |
| |
|
||||||| |||||||| ||||| ||||||||||| || ||||||| ||||||||||||| ||||||| || ||||||||| ||||| ||||||| |
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| T |
21702148 |
tgtcataagctttactaatatcaagcttaagagccacttctcccacattacctttgacttttatcttcatacgattaatgatctcaatggcaaccatagc |
21702049 |
T |
|
| Q |
173 |
attatc |
178 |
Q |
| |
|
|||||| |
|
|
| T |
21702048 |
attatc |
21702043 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 62 - 100
Target Start/End: Original strand, 5613176 - 5613214
Alignment:
| Q |
62 |
ccaatcaattttgtcatacgctttacttatatccagctt |
100 |
Q |
| |
|
|||||||||| | |||||||||||||||||||||||||| |
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|
| T |
5613176 |
ccaatcaattctatcatacgctttacttatatccagctt |
5613214 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 61 - 178
Target Start/End: Original strand, 23266603 - 23266720
Alignment:
| Q |
61 |
tccaatcaattttgtcatacgctttacttatatccagcttaagagcaacatctcccaatatacctttgactttcgacttcatataatgaatgatctctat |
160 |
Q |
| |
|
|||| |||||||||||||| ||||| || ||||| || || ||||| || ||||| | || | ||||||||||||||||||| ||| || || ||||| |
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|
| T |
23266603 |
tccactcaattttgtcatatgctttgctaatatcaagtttcagagccacttctccaacgttatccttgactttcgacttcatatgatgtattatttctat |
23266702 |
T |
|
| Q |
161 |
ggctgccatagcattatc |
178 |
Q |
| |
|
|| |||||| ||||||| |
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|
| T |
23266703 |
agcagccataacattatc |
23266720 |
T |
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Back To:
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