View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12661_low_47 (Length: 225)
Name: NF12661_low_47
Description: NF12661
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12661_low_47 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 217; Significance: 1e-119; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 39315518 - 39315294
Alignment:
| Q |
1 |
aaagtatatagcatgggaatcataccataatgccataagcaagaccttgaattccaacactggctatggatgctccagcaagctctagagatcctaaatg |
100 |
Q |
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| T |
39315518 |
aaagtagatagcatgagaatcataccataatgccataagcaagaccttgaattccaacactggctatggatgctccagcaagctctagagatcctaaatg |
39315419 |
T |
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| Q |
101 |
tccacaaaacatcatggtcacaaagcttaacataaaattgcaaaggtagacaacaatagaagcaccagaaaggatccataggagtcttgactcccaagca |
200 |
Q |
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| T |
39315418 |
tccacaaaacatcatggtcacaaagcttaacataaaattgcaaaggtagacaacaatagaagcaccagaaaggatccataggagtcttgactcccaagca |
39315319 |
T |
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| Q |
201 |
acaagtttaagccaccatctcaacc |
225 |
Q |
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| T |
39315318 |
acaagtttaagccaccatctcaacc |
39315294 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 5 - 224
Target Start/End: Original strand, 38138926 - 38139144
Alignment:
| Q |
5 |
tatatagcatgggaatcataccataatgccataagcaagaccttgaattccaacactggctatggatgctccagcaagctctagagatcctaaatgtcca |
104 |
Q |
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||||||| ||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
38138926 |
tatatagtatgagaatcataccataatgccataagcaagaccttgaattccaacagtggctatggatgctccagcaagctttagagatcctaaatgtcca |
38139025 |
T |
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| Q |
105 |
caaaacatcatggtcacaaagcttaacataaaattgcaaaggtagacaacaatagaagcaccagaaaggatccataggagtcttgactcccaagcaacaa |
204 |
Q |
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| T |
38139026 |
caaaatatcatggtcacaaagcttagcataaaattgcaaaggtagaaaataatggaagcacca-agagaatccataggagccatgactcccaagcaacaa |
38139124 |
T |
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| Q |
205 |
gtttaagccaccatctcaac |
224 |
Q |
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| T |
38139125 |
gtttaagccaccatctcaac |
38139144 |
T |
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