View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12661_low_50 (Length: 209)
Name: NF12661_low_50
Description: NF12661
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12661_low_50 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 109; Significance: 5e-55; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 109; E-Value: 5e-55
Query Start/End: Original strand, 13 - 133
Target Start/End: Complemental strand, 8459915 - 8459795
Alignment:
| Q |
13 |
catagggatggagttgagaagttgcatgagaagtgaaaccaactgttagagtgaaatcttattcaacgatattatttctcaatcgtctagtttgagcaat |
112 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||| |
|
|
| T |
8459915 |
cataaggatggagttgagaagttgcatgagaagtgaaaccaactgttagagtgaaatcttattcaacgataatatttctcaattgtctagtttgagcaat |
8459816 |
T |
|
| Q |
113 |
tttgagaccatttaaaattgc |
133 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
8459815 |
tttgagaccatttaaaattgc |
8459795 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 126 - 189
Target Start/End: Original strand, 8459813 - 8459876
Alignment:
| Q |
126 |
aaaattgctcaaactagacgattgagaaataatatcgttgaataagatttcactctaacagttg |
189 |
Q |
| |
|
||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
8459813 |
aaaattgctcaaactagacaattgagaaatattatcgttgaataagatttcactctaacagttg |
8459876 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 11 - 119
Target Start/End: Complemental strand, 8466187 - 8466079
Alignment:
| Q |
11 |
agcatagggatggagttgagaagttgcatgagaagtgaaaccaactgttagagtgaaatcttattcaacgatattatttctcaatcgtctagtttgagca |
110 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||| |||||||||||||| ||||| ||| || |||| |||| || |||| | || ||||||| |
|
|
| T |
8466187 |
agcataaggatggagttgagaagttgcatgagaagtgaaatcaactgttagagtggaatctaatttaatgataatattcctgaatctttcagattgagca |
8466088 |
T |
|
| Q |
111 |
attttgaga |
119 |
Q |
| |
|
|| |||||| |
|
|
| T |
8466087 |
atcttgaga |
8466079 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 11 - 85
Target Start/End: Complemental strand, 24746580 - 24746506
Alignment:
| Q |
11 |
agcatagggatggagttgagaagttgcatgagaagtgaaaccaactgttagagtgaaatcttattcaacgatatt |
85 |
Q |
| |
|
|||||| ||||| |||||||||||| || ||||||||||| |||| ||||| ||||||| |||||| |||||| |
|
|
| T |
24746580 |
agcataaggatgaagttgagaagttccacgagaagtgaaataaactattagacggaaatctgattcaatgatatt |
24746506 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University