View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12661_low_6 (Length: 524)

Name: NF12661_low_6
Description: NF12661
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12661_low_6
NF12661_low_6
[»] chr6 (4 HSPs)
chr6 (11-275)||(1940044-1940310)
chr6 (18-331)||(1954465-1954764)
chr6 (11-215)||(1925776-1925983)
chr6 (390-461)||(9852104-9852175)
[»] chr3 (4 HSPs)
chr3 (364-467)||(38511214-38511318)
chr3 (410-470)||(46835555-46835615)
chr3 (391-466)||(45640689-45640764)
chr3 (391-461)||(51646886-51646956)
[»] chr1 (2 HSPs)
chr1 (406-466)||(44621419-44621479)
chr1 (390-462)||(47932414-47932486)
[»] chr5 (1 HSPs)
chr5 (406-465)||(34509399-34509458)
[»] chr7 (2 HSPs)
chr7 (406-466)||(26000017-26000077)
chr7 (389-464)||(44111380-44111456)
[»] chr2 (2 HSPs)
chr2 (391-461)||(24538238-24538308)
chr2 (391-458)||(32277045-32277112)
[»] chr8 (1 HSPs)
chr8 (391-470)||(30850194-30850273)


Alignment Details
Target: chr6 (Bit Score: 179; Significance: 2e-96; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 11 - 275
Target Start/End: Complemental strand, 1940310 - 1940044
Alignment:
Q  11 cacagacagcattgtgttcttgaataaaaagagcctgcaaagttgagacaccagcccaactattgcgaacatcacctgaaattgctgttccattttcatt 110  Q
    |||| ||||||||||||||| ||| |||||| | ||||||||||| |||||||||||||||||| ||||  |||||||||||||||||||||| ||||||    
T  1940310 cacacacagcattgtgttctagaacaaaaagggtctgcaaagttgtgacaccagcccaactattacgaatgtcacctgaaattgctgttccatcttcatt 1940211  T
Q  111 atgaagaagttcaccttcctttgatattttgattttaccatctttgaaagtcctcactttgttcaaaacttcttgattgcttccatatatcacacttcca 210  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  1940210 atgaagaagttcaccttcctttgatattttgattttaccatctttgaaagtcctcactttgtccaaaacttcttgattgcttccatatatcacacttcca 1940111  T
Q  211 tccctattatcatatatatagtttcatg-catctcatgtgtaagttcaa-ttagaaggtcttaaatt 275  Q
    ||||||||||||||||  |   |||||| ||| |||||||||||||||| ||| |||||||||||||    
T  1940110 tccctattatcatatagtttcattcatgtcatgtcatgtgtaagttcaatttaaaaggtcttaaatt 1940044  T

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Target: chr6; HSP #2
Raw Score: 178; E-Value: 9e-96
Query Start/End: Original strand, 18 - 331
Target Start/End: Complemental strand, 1954764 - 1954465
Alignment:
Q  18 agcattgtgttcttgaataaaaagagcctgcaaagttgagacaccagcccaactattgcgaacatcacctgaaattgctgttccattttcattatgaaga 117  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||  |||||||||||| ||   |    
T  1954764 agcattgtgttcttgaataaagagagcctgcaaagttgagacaccagcccaactattgcgaacgtcacctgaaattgctactccattttcattttgctta 1954665  T
Q  118 agttcaccttcctttgatattttgattttaccatctttgaaagtcctcactttgttcaaaacttcttgattgcttccatatatcacacttccatccctat 217  Q
    ||   ||| || | | ||||||| |  || |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1954664 agggtaccatcgtctaatatttttaacttcccatctttgaaagttctcactttgttcaaaacttcttgattgcttccatatatcacacttccatccctat 1954565  T
Q  218 tatcatatatatagtttcatgcatctcatgtgtaagttcaattagaaggtcttaaattgagactatatatctaattaagtataattactagacaaaatta 317  Q
    |||||    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||          |||||||||||||||||||||||||    
T  1954564 tatca----tatagtttcatgcatgtcatgtgtaagttcaattagaaggtcttaaattgagacta----------taagtataattactagacaaaatta 1954479  T

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Target: chr6; HSP #3
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 11 - 215
Target Start/End: Complemental strand, 1925983 - 1925776
Alignment:
Q  11 cacagacagcattgtgttcttgaataaaaagagcctgcaaagttgagacaccagcccaactattgcgaacatcacctgaaattgctgttccattttcatt 110  Q
    |||| |||||||||||||||||||| ||||| || ||||||||||| ||||||||||||||||||||||||||||||||||||||   ||||| ||| ||    
T  1925983 cacaaacagcattgtgttcttgaatgaaaagggcttgcaaagttgaaacaccagcccaactattgcgaacatcacctgaaattgcaactccatcttcgtt 1925884  T
Q  111 atgaagaagttca---ccttcctttgatattttgattttaccatctttgaaagtcctcactttgttcaaaacttcttgattgcttccatatatcacactt 207  Q
     || ||||| | |   ||||||||||||||||| |  || ||||||| | |||||||||||| | |||||| ||| | ||||||||||||||||||||||    
T  1925883 ttgtagaagatgatttccttcctttgatatttttaacttcccatcttgggaagtcctcacttgggtcaaaatttcatcattgcttccatatatcacactt 1925784  T
Q  208 ccatccct 215  Q
    ||||||||    
T  1925783 ccatccct 1925776  T

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Target: chr6; HSP #4
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 390 - 461
Target Start/End: Complemental strand, 9852175 - 9852104
Alignment:
Q  390 attggagccaaaaagattaggattagggttgacacattttcttaaaagtgttattcgtattataaataagta 461  Q
    ||||||||||||||||||||||||||||||| |||| ||| |||  |||||||||| ||||| |||||||||    
T  9852175 attggagccaaaaagattaggattagggttggcacaattttttagcagtgttattcatattagaaataagta 9852104  T

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Target: chr3 (Bit Score: 45; Significance: 2e-16; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 364 - 467
Target Start/End: Original strand, 38511214 - 38511318
Alignment:
Q  364 tagattgaaatcaaaggccaccatacattggagccaaaaag-attaggattagggttgacacattttcttaaaagtgttattcgtattataaataagtaa 462  Q
    |||||||||||||| |||||||| ||||||| ||| ||||  ||||||||||| |||  || ||||| ||||||||||||||| ||||| |||||||||     
T  38511214 tagattgaaatcaacggccaccaaacattggcgcccaaaatcattaggattagagtttgcaaattttgttaaaagtgttattcatattaaaaataagtat 38511313  T
Q  463 gatat 467  Q
    |||||    
T  38511314 gatat 38511318  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 410 - 470
Target Start/End: Original strand, 46835555 - 46835615
Alignment:
Q  410 gattagggttgacacattttcttaaaagtgttattcgtattataaataagtaagatatgat 470  Q
    |||||||||||||||| ||| |||| | |||||||| ||||| ||||||||| ||||||||    
T  46835555 gattagggttgacacaatttgttaatattgttattcatattagaaataagtatgatatgat 46835615  T

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Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 391 - 466
Target Start/End: Original strand, 45640689 - 45640764
Alignment:
Q  391 ttggagccaaaaagattaggattagggttgacacattttcttaaaagtgttattcgtattataaataagtaagata 466  Q
    ||||||||||||  ||||||||||||||||||||| ||| |||| | |||||||  ||||| | |||| |||||||    
T  45640689 ttggagccaaaaccattaggattagggttgacacaatttgttaacattgttattgatattagagataaataagata 45640764  T

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Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 391 - 461
Target Start/End: Complemental strand, 51646956 - 51646886
Alignment:
Q  391 ttggagccaaaaagattaggattagggttgacacattttcttaaaagtgttattcgtattataaataagta 461  Q
    ||||||||||||| || | ||||||||||||||||  || |||| | |||||||| ||||| |||||||||    
T  51646956 ttggagccaaaaacatcaagattagggttgacacaaattgttaacaatgttattcatattagaaataagta 51646886  T

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Target: chr1 (Bit Score: 45; Significance: 2e-16; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 406 - 466
Target Start/End: Original strand, 44621419 - 44621479
Alignment:
Q  406 ttaggattagggttgacacattttcttaaaagtgttattcgtattataaataagtaagata 466  Q
    ||||||||||||||||||||||||||||| | ||||||| |||||| ||||||||||||||    
T  44621419 ttaggattagggttgacacattttcttaacattgttattagtattagaaataagtaagata 44621479  T

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Target: chr1; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 390 - 462
Target Start/End: Complemental strand, 47932486 - 47932414
Alignment:
Q  390 attggagccaaaaagattaggattagggttgacacattttcttaaaagtgttattcgtattataaataagtaa 462  Q
    |||||||||||||||||||||||||| ||||||||| |||||||| | ||||||| |||||| || |||||||    
T  47932486 attggagccaaaaagattaggattagagttgacacaatttcttaacattgttattagtattagaattaagtaa 47932414  T

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Target: chr5 (Bit Score: 44; Significance: 8e-16; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 406 - 465
Target Start/End: Original strand, 34509399 - 34509458
Alignment:
Q  406 ttaggattagggttgacacattttcttaaaagtgttattcgtattataaataagtaagat 465  Q
    ||||||||||||||||||||||||||||| | ||||||| |||||| |||||||||||||    
T  34509399 ttaggattagggttgacacattttcttaacattgttattagtattagaaataagtaagat 34509458  T

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Target: chr7 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 406 - 466
Target Start/End: Complemental strand, 26000077 - 26000017
Alignment:
Q  406 ttaggattagggttgacacattttcttaaaagtgttattcgtattataaataagtaagata 466  Q
    ||||||||||||||| ||||||||||||| | ||||||| |||||| ||||||||||||||    
T  26000077 ttaggattagggttgtcacattttcttaacattgttattagtattagaaataagtaagata 26000017  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 389 - 464
Target Start/End: Complemental strand, 44111456 - 44111380
Alignment:
Q  389 cattggagccaaaaagat-taggattagggttgacacattttcttaaaagtgttattcgtattataaataagtaaga 464  Q
    |||||| |||||| |||| ||| |||||||||||||  ||||||||| | ||||||| |||||  ||||||||||||    
T  44111456 cattggtgccaaagagatgtagaattagggttgacaatttttcttaacattgttattagtattggaaataagtaaga 44111380  T

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Target: chr2 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 391 - 461
Target Start/End: Complemental strand, 24538308 - 24538238
Alignment:
Q  391 ttggagccaaaaagattaggattagggttgacacattttcttaaaagtgttattcgtattataaataagta 461  Q
    ||||||||||||  ||||||||||||||||||||| ||| |||| | |||||||| ||||| |||||||||    
T  24538308 ttggagccaaaactattaggattagggttgacacaatttgttaacattgttattcatattagaaataagta 24538238  T

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Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 391 - 458
Target Start/End: Complemental strand, 32277112 - 32277045
Alignment:
Q  391 ttggagccaaaaagattaggattagggttgacacattttcttaaaagtgttattcgtattataaataa 458  Q
    |||| |||||||  ||||||||||||||||||||||||| |||| | ||||||| |||||| ||||||    
T  32277112 ttggcgccaaaataattaggattagggttgacacatttttttaacattgttattagtattagaaataa 32277045  T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 391 - 470
Target Start/End: Original strand, 30850194 - 30850273
Alignment:
Q  391 ttggagccaaaaagattaggattagggttgacacattttcttaaaagtgttattcgtattataaataagtaagatatgat 470  Q
    ||||||||||||  |||| ||||||||||| |||| ||| |||  |||||||||| ||||| ||||||||| ||||||||    
T  30850194 ttggagccaaaatcattaagattagggttggcacaattttttagcagtgttattcatattagaaataagtatgatatgat 30850273  T

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