View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12661_low_7 (Length: 498)
Name: NF12661_low_7
Description: NF12661
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12661_low_7 |
 | |
|
| [»] chr1 (6 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 420; Significance: 0; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 420; E-Value: 0
Query Start/End: Original strand, 16 - 498
Target Start/End: Original strand, 38085793 - 38086272
Alignment:
| Q |
16 |
gatatcacaaaatccaatgcctatgtacaaatgtaagtattcaacgaaaattaaatccagtgagtaaaatagaaaatgatgaaaaacatatcgtggaatg |
115 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
38085793 |
gatatcacaaaatccaatgcctatgtacaaatgtaagtattcaacgaaaattaaatccagtgagtaaaatagaaaatgatgaaaaacatatagtggaatg |
38085892 |
T |
|
| Q |
116 |
actacacattttcaaaaattttgtcaaaaaaatagagcaagttctcnnnnnnnnnnnnnttaccttgaaaacattttcatcataagaaccaggagagatt |
215 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38085893 |
actacacattttcaaaaattttgtcaaaaaaatagagcaagttct---aaaaaaaaaaattaccttgaaaacattttcatcataagaaccaggagagatt |
38085989 |
T |
|
| Q |
216 |
tgaagagctttataacctccatcattgaaagcccatgttcttcctacatttaaaccatgttgagaagcttgttgaaaagtggaagtgaccttagaacttg |
315 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38085990 |
tgaagagctttataacctccatcattgaaagcccatgttcttcctacatttaaaccatgttgagaagcttgttgaaaagtggaagtgaccttagaacttg |
38086089 |
T |
|
| Q |
316 |
tagatggatcagatgccatggttgttaaccaataggaattgaatccattcacatagtgtgttttcccattcagaataaaatgtgttccttttctttgacc |
415 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||| | |
|
|
| T |
38086090 |
tagatggatcagatgccatggttgttaaccaataggaattgaatccattcacatagtgtgtcttcccattgagaataaaatgtgttccttttctttgaac |
38086189 |
T |
|
| Q |
416 |
gaaaccagcatcaatgttagcaccaacgtgttgaataacagccaaagccactagaaaatatgtcaataccaaaatttgaaacc |
498 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38086190 |
gaaaccagcatcaatgttagcaccaacgtgttgaataacagccaaagccactagaaaatatgtcaataccaaaatttgaaacc |
38086272 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 155; E-Value: 4e-82
Query Start/End: Original strand, 175 - 421
Target Start/End: Original strand, 38111769 - 38112015
Alignment:
| Q |
175 |
ttaccttgaaaacattttcatcataagaaccaggagagatttgaagagctttataacctccatcattgaaagcccatgttcttcctacatttaaaccatg |
274 |
Q |
| |
|
||||| |||| ||||||||||| || ||||||||||| ||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||| |
|
|
| T |
38111769 |
ttaccctgaagacattttcatcgtacttgccaggagagatctgaagagctttataacctccatcgttgcaagcccatgttcttcctacatttaaaccatg |
38111868 |
T |
|
| Q |
275 |
ttgagaagcttgttgaaaagtggaagtgaccttagaacttgtagatggatcagatgccatggttgttaaccaataggaattgaatccattcacatagtgt |
374 |
Q |
| |
|
| ||||||||||||| ||| | |||||||||||||||||||||||||| |||||||||||| | ||||||||||||||||||||||||||||||||||| |
|
|
| T |
38111869 |
tcgagaagcttgttggaaatttgaagtgaccttagaacttgtagatgggtcagatgccatgatcattaaccaataggaattgaatccattcacatagtgt |
38111968 |
T |
|
| Q |
375 |
gttttcccattcagaataaaatgtgttccttttctttgaccgaaacc |
421 |
Q |
| |
|
|| || ||||||||||||||||| || |||||||||||| ||||||| |
|
|
| T |
38111969 |
gtctttccattcagaataaaatgagtaccttttctttgaacgaaacc |
38112015 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 131; E-Value: 9e-68
Query Start/End: Original strand, 175 - 421
Target Start/End: Original strand, 38142750 - 38142996
Alignment:
| Q |
175 |
ttaccttgaaaacattttcatcataagaaccaggagagatttgaagagctttataacctccatcattgaaagcccatgttcttcctacatttaaaccatg |
274 |
Q |
| |
|
|||||||||| ||||||||||| || ||||||||||| ||||||| ||||||| ||||||| ||||||||| |||||||||| |||||||||||||| |
|
|
| T |
38142750 |
ttaccttgaagacattttcatcgtacttgccaggagagatctgaagaggtttataatctccatcgttgaaagccaatgttcttcccacatttaaaccatg |
38142849 |
T |
|
| Q |
275 |
ttgagaagcttgttgaaaagtggaagtgaccttagaacttgtagatggatcagatgccatggttgttaaccaataggaattgaatccattcacatagtgt |
374 |
Q |
| |
|
||||||||||||||||||| |||| |||||||| ||||||||||| ||||||||||| || | ||||| ||||||||||||||||||||||||||| |
|
|
| T |
38142850 |
ttgagaagcttgttgaaaattggacgtgaccttgacccttgtagatgggtcagatgccattgtcatcaaccagtaggaattgaatccattcacatagtgt |
38142949 |
T |
|
| Q |
375 |
gttttcccattcagaataaaatgtgttccttttctttgaccgaaacc |
421 |
Q |
| |
|
|| || ||||||||||||||||| || |||||||||||| ||||||| |
|
|
| T |
38142950 |
gtctttccattcagaataaaatgagtaccttttctttgaacgaaacc |
38142996 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 128; E-Value: 6e-66
Query Start/End: Original strand, 175 - 434
Target Start/End: Original strand, 38156064 - 38156323
Alignment:
| Q |
175 |
ttaccttgaaaacattttcatcataagaaccaggagagatttgaagagctttataacctccatcattgaaagcccatgttcttcctacatttaaaccatg |
274 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||| |||||||||| |||| || ||||||| |||||||||||||||||||| |||||||||||||| |
|
|
| T |
38156064 |
ttaccttgaagacattttcatcataagaaccaggagaaatttgaagaggtttagaatctccatcgttgaaagcccatgttcttcccacatttaaaccatg |
38156163 |
T |
|
| Q |
275 |
ttgagaagcttgttgaaaagtggaagtgaccttagaacttgtagatggatcagatgccatggttgttaaccaataggaattgaatccattcacatagtgt |
374 |
Q |
| |
|
||||||||||||||||||| |||| |||||||| ||||||||||| ||||||||||| || | ||||| ||||||||||||||||||| || | | |
|
|
| T |
38156164 |
ttgagaagcttgttgaaaattggacgtgaccttgacccttgtagatgggtcagatgccattgtcatcaaccagtaggaattgaatccattcaagtaatat |
38156263 |
T |
|
| Q |
375 |
gttttcccattcagaataaaatgtgttccttttctttgaccgaaaccagcatcaatgtta |
434 |
Q |
| |
|
| |||||||| | ||||||||| || |||||||||||| ||||||| ||| ||| |||| |
|
|
| T |
38156264 |
ggcttcccatttaaaataaaatgagtgccttttctttgaacgaaaccggcaccaacgtta |
38156323 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 116; E-Value: 8e-59
Query Start/End: Original strand, 183 - 422
Target Start/End: Original strand, 38091537 - 38091776
Alignment:
| Q |
183 |
aaaacattttcatcataagaaccaggagagatttgaagagctttataacctccatcattgaaagcccatgttcttcctacatttaaaccatgttgagaag |
282 |
Q |
| |
|
|||||| ||||||||||| |||||||||| |||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
38091537 |
aaaacagtttcatcataaaaaccaggagaaatttgaagggctttatagcctccatcattgaaagcccatgttcttcctacatttaaaccatgttgtgaag |
38091636 |
T |
|
| Q |
283 |
cttgttgaaaagtggaagtgaccttagaacttgtagatggatcagatgccatggttgttaaccaataggaattgaatccattcacatagtgtgttttccc |
382 |
Q |
| |
|
|||||||||| | || || || || | ||||||||| | |||| |||||| | | ||||| | ||||||||||||||||||||||||||| ||||| |
|
|
| T |
38091637 |
cttgttgaaatgcagatgtaactttgggtcttgtagataggtcagctgccataatcatcaaccagtgggaattgaatccattcacatagtgtgtcttccc |
38091736 |
T |
|
| Q |
383 |
attcagaataaaatgtgttccttttctttgaccgaaacca |
422 |
Q |
| |
|
||||| || |||||| |||||||||||||| |||||||| |
|
|
| T |
38091737 |
attcataagaaaatggattccttttctttgaacgaaacca |
38091776 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 16 - 101
Target Start/End: Original strand, 38142458 - 38142539
Alignment:
| Q |
16 |
gatatcacaaaatccaatgcctatgtacaaatgtaagtattcaacgaaaattaaatccagtgagtaaaatagaaaatgatgaaaaa |
101 |
Q |
| |
|
|||||||||||||||||| |||| ||||| ||| || ||||||||||| |||||||| |||||||| |||||||||| |||| |
|
|
| T |
38142458 |
gatatcacaaaatccaatccctacgtacacatgcaaatattcaacgaa----aaatccagcaagtaaaattgaaaatgatgtaaaa |
38142539 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 57; Significance: 1e-23; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 195 - 295
Target Start/End: Complemental strand, 45891805 - 45891705
Alignment:
| Q |
195 |
tcataagaaccaggagagatttgaagagctttataacctccatcattgaaagcccatgttcttcctacatttaaaccatgttgagaagcttgttgaaaag |
294 |
Q |
| |
|
||||| |||||||| || |||||||||||||||||||||||||||||||| |||||||||||| | | |||||||||| ||| ||||||| |||||||| |
|
|
| T |
45891805 |
tcataggaaccaggtgaaatttgaagagctttataacctccatcattgaaggcccatgttcttgccaagtttaaaccattttgggaagcttcttgaaaag |
45891706 |
T |
|
| Q |
295 |
t |
295 |
Q |
| |
|
| |
|
|
| T |
45891705 |
t |
45891705 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 204 - 257
Target Start/End: Complemental strand, 52433432 - 52433379
Alignment:
| Q |
204 |
ccaggagagatttgaagagctttataacctccatcattgaaagcccatgttctt |
257 |
Q |
| |
|
||||||||| |||||| | ||||||||| |||||| ||||||||||||||||| |
|
|
| T |
52433432 |
ccaggagagtattgaaggggtttataaccaccatcactgaaagcccatgttctt |
52433379 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University