View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12662_low_1 (Length: 508)
Name: NF12662_low_1
Description: NF12662
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12662_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 399; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 399; E-Value: 0
Query Start/End: Original strand, 59 - 465
Target Start/End: Original strand, 42324876 - 42325282
Alignment:
| Q |
59 |
ggcatttttcaaccattaaaatacctaccaaatgtagcatctgttgttccaggaatatctgtcacaatcctgtattaaataaatacaacagaatttaatc |
158 |
Q |
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| T |
42324876 |
ggcatttttcaaccattaaaatacctaccaaatgtagcatctgttgttccaggaatatctgtcacaatcctgtattaaataaatacaacagaatttaatc |
42324975 |
T |
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| Q |
159 |
aaacaaaataactggttaatttctagatatatggtactatatctcattatatattatatttaccagtgcaagtgttctcttagataaggatcactggggc |
258 |
Q |
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| T |
42324976 |
aaacaaaataactggttaatttctagatatatggtactatatctcattatatattatatttaccagtgcaagtgttctcttagataaggatcactagggc |
42325075 |
T |
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| Q |
259 |
caggaacatcagggtctgtcatcacctacaccaaccaaatatgtatatattagctcagtcatttaggttttgtcaataccattccaataaagcacaaatg |
358 |
Q |
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| T |
42325076 |
caggaacatcagggtctgtcatcacctacaccaaccaaatatgtatatattagctcagtcatttaggttttgtcaataccattccaataaagcacaaatg |
42325175 |
T |
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| Q |
359 |
atagttgttagtttgttagagagagggatgtttgatgttgtgagagattaaacaatatgaaactaattaaacaaatctctgactatatctaacaaggtga |
458 |
Q |
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| T |
42325176 |
atagttgttagtttgttagagagatggatgtttgatgttgtgagagattaaacaatatgaaactaattaaacaaatctctgactatatctaacaaggtga |
42325275 |
T |
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| Q |
459 |
aatatgt |
465 |
Q |
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| T |
42325276 |
aatatgt |
42325282 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 7 - 41
Target Start/End: Original strand, 42324814 - 42324848
Alignment:
| Q |
7 |
tacaatttcaatatgtcattatattctctctcatc |
41 |
Q |
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| T |
42324814 |
tacaatttcaatatgtcattatattctctctcatc |
42324848 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 219 - 268
Target Start/End: Original strand, 26206116 - 26206165
Alignment:
| Q |
219 |
taccagtgcaagtgttctcttagataaggatcactggggccaggaacatc |
268 |
Q |
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|||||||| ||||||||| | | |||||||||||| |||||||||||||| |
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| T |
26206116 |
taccagtgtaagtgttctttcatataaggatcacttgggccaggaacatc |
26206165 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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