View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12662_low_2 (Length: 409)
Name: NF12662_low_2
Description: NF12662
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12662_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 383; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 383; E-Value: 0
Query Start/End: Original strand, 12 - 406
Target Start/End: Original strand, 44577482 - 44577876
Alignment:
| Q |
12 |
gatggacatcaaaaatttggagaatgaaaaataagcataatgatataaatgaaacagcagacaatatataataatagaaacacaggcaacaaaacttcag |
111 |
Q |
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| T |
44577482 |
gatggacatcaaaaatttggagaatgaaaaataagcataatgatataaatgaaacagcagaaaatatataataatagaaacacaggcaacaaaacttcag |
44577581 |
T |
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| Q |
112 |
taaagtaatcattgagcaaaactataactatccggagttgccaaattaacatactcaaatggtccaaagtttcccaataaaatattcattatttcatcta |
211 |
Q |
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| T |
44577582 |
taaagtaatcattgagcaaaactataactatccggagttgccaaattaacatactcaaatggtccaaagtttcccaataaaatattcattatttcatcta |
44577681 |
T |
|
| Q |
212 |
aataaataaattacatcctaccacaaagtttgcaagattgctgacctagttaaagccgagactcatttccttttgcttcagttctaaagccatacgttca |
311 |
Q |
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| T |
44577682 |
aataaataaattacatcctaccacaaagtttgcaagattgctgacctagttaaagccgagactcatttccttttgcttcagttctaaagccatacgttca |
44577781 |
T |
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| Q |
312 |
ttttcaagcttcattctttcgttttctagactcagcttctccaactcccggtccttttgcttgctaaatctctgccacttgaatctctgcttctc |
406 |
Q |
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| T |
44577782 |
ttttcaagcttcattctttcgttttctagactcagcttctccaactcccggtccttttgcttgctaaatctctgccacttgaatctttgtttctc |
44577876 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 49; Significance: 7e-19; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 279 - 395
Target Start/End: Complemental strand, 12638647 - 12638531
Alignment:
| Q |
279 |
tccttttgcttcagttctaaagccatacgttcattttcaagcttcattctttcgttttctagactcagcttctccaactcccggtccttttgcttgctaa |
378 |
Q |
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|||||| |||| ||||||||||| ||||||||||| |||| ||||||||| || ||||| || | | |||||||||||| ||||| |||| |||||||| |
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| T |
12638647 |
tcctttcgctttagttctaaagcaatacgttcattctcaatcttcattctgtcattttccagcttgaacttctccaactctcggtcttttttcttgctaa |
12638548 |
T |
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| Q |
379 |
atctctgccacttgaat |
395 |
Q |
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| |||| |||||||||| |
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| T |
12638547 |
acctctcccacttgaat |
12638531 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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