View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12663_high_3 (Length: 338)

Name: NF12663_high_3
Description: NF12663
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12663_high_3
NF12663_high_3
[»] chr6 (7 HSPs)
chr6 (20-330)||(33575833-33576143)
chr6 (214-288)||(33568841-33568915)
chr6 (202-264)||(19746857-19746919)
chr6 (35-156)||(5978705-5978826)
chr6 (216-333)||(34861965-34862082)
chr6 (34-78)||(33568661-33568705)
chr6 (48-94)||(19747033-19747079)
[»] chr3 (3 HSPs)
chr3 (20-333)||(36339778-36340091)
chr3 (201-277)||(25901429-25901505)
chr3 (201-277)||(25915447-25915523)
[»] scaffold0707 (2 HSPs)
scaffold0707 (214-288)||(5235-5309)
scaffold0707 (34-78)||(5055-5099)
[»] chr1 (2 HSPs)
chr1 (22-72)||(17954036-17954086)
chr1 (34-81)||(39379422-39379469)
[»] chr7 (7 HSPs)
chr7 (202-251)||(26237459-26237508)
chr7 (22-72)||(24035416-24035466)
chr7 (33-91)||(26237278-26237336)
chr7 (214-251)||(24016646-24016683)
chr7 (33-78)||(26229881-26229926)
chr7 (202-251)||(26256620-26256669)
chr7 (34-78)||(24391079-24391123)
[»] chr2 (1 HSPs)
chr2 (204-252)||(25376921-25376969)
[»] chr4 (2 HSPs)
chr4 (34-82)||(3557388-3557436)
chr4 (201-277)||(10571426-10571502)


Alignment Details
Target: chr6 (Bit Score: 279; Significance: 1e-156; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 20 - 330
Target Start/End: Original strand, 33575833 - 33576143
Alignment:
Q  20 agaagcaaggtttaagttttcaatttgggtgataattgttggagaaatattcaaagtttccctttcgttcctattttgggaaatgatggtgtatattgta 119  Q
    |||||||||||| |||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||  ||| ||    
T  33575833 agaagcaaggttaaagttttcaattcgggtgataattgttggagaaatattcgaagtttccctttcgttcctattttgggaaatgatggtgttcatttta 33575932  T
Q  120 gtggaactattaactggttagctattcacagtgactacgcaccaattgaggttggaggaacatttaaaactcttattggtcctgttgagaaatgtgtgat 219  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33575933 gtggaactattaactggttagctattcacagtgactacgcaccaattgaggttggaggaacatttaaaactcttattggtcctgttgagaaatgtgtgat 33576032  T
Q  220 tgtttcgcttgatctttcgacagagacatacacacaatttttgcttcctaagggttttaaggagctgccttatgataagccatcagttcgagttctgatg 319  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  33576033 tgtttcgcttgatcttttgacagagacatacacacaatttttgcttcctacgggttttaaggagctgccttatgataagccatcagttcgagttctgatg 33576132  T
Q  320 gactgcctttg 330  Q
    |||||||||||    
T  33576133 gactgcctttg 33576143  T

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Target: chr6; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 214 - 288
Target Start/End: Original strand, 33568841 - 33568915
Alignment:
Q  214 tgtgattgtttcgcttgatctttcgacagagacatacacacaatttttgcttcctaagggttttaaggagctgcc 288  Q
    |||||||||||| |||||||||||| | |||||||||||||||||||||||||||||||||||||| ||| ||||    
T  33568841 tgtgattgtttcccttgatctttcgccggagacatacacacaatttttgcttcctaagggttttaatgaggtgcc 33568915  T

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Target: chr6; HSP #3
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 202 - 264
Target Start/End: Complemental strand, 19746919 - 19746857
Alignment:
Q  202 tgttgagaaatgtgtgattgtttcgcttgatctttcgacagagacatacacacaatttttgct 264  Q
    ||||||| ||| |||||||||||| |||||||||||||| |||||||||||||||||||||||    
T  19746919 tgttgagcaatttgtgattgtttcccttgatctttcgactgagacatacacacaatttttgct 19746857  T

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Target: chr6; HSP #4
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 35 - 156
Target Start/End: Original strand, 5978705 - 5978826
Alignment:
Q  35 gttttcaatttgggtgataattgttggagaaatattcaaagtttccctttcgttcctattttgggaaatgatggtgtatattgtagtggaactattaact 134  Q
    ||||||| ||||||||||  |||||||||| | ||||||||||| ||||| |||||| || | || |||||||||||  |||  ||||||||  |||| |    
T  5978705 gttttcagtttgggtgatttttgttggagagagattcaaagttttcctttggttcctcttatcgggaatgatggtgtgcatttgagtggaacggttaatt 5978804  T
Q  135 ggttagctattcacagtgacta 156  Q
    || ||||||||||| |||||||    
T  5978805 ggctagctattcacggtgacta 5978826  T

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Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 216 - 333
Target Start/End: Complemental strand, 34862082 - 34861965
Alignment:
Q  216 tgattgtttcgcttgatctttcgacagagacatacacacaatttttgcttcctaagggttttaaggagctgccttatgataagccatcagttcgagttct 315  Q
    |||||| ||||||||||||||| || |||||||||| | | || |||||||| ||||||||||| ||| |||| | || | ||||||   |||| |||||    
T  34862082 tgattgcttcgcttgatctttccaccgagacatacaaatatttgttgcttcccaagggttttaaagagttgccatgtgctgagccatatcttcgggttct 34861983  T
Q  316 gatggactgcctttgctt 333  Q
    | |||| |||||||||||    
T  34861982 gttggattgcctttgctt 34861965  T

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Target: chr6; HSP #6
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 34 - 78
Target Start/End: Original strand, 33568661 - 33568705
Alignment:
Q  34 agttttcaatttgggtgataattgttggagaaatattcaaagttt 78  Q
    |||||||| ||||||||||| ||||||||||||||||||||||||    
T  33568661 agttttcagtttgggtgatagttgttggagaaatattcaaagttt 33568705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 48 - 94
Target Start/End: Complemental strand, 19747079 - 19747033
Alignment:
Q  48 gtgataattgttggagaaatattcaaagtttccctttcgttcctatt 94  Q
    ||||||||||||||||||||||| | |||||||||||  ||||||||    
T  19747079 gtgataattgttggagaaatattgagagtttccctttgattcctatt 19747033  T

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Target: chr3 (Bit Score: 78; Significance: 3e-36; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 20 - 333
Target Start/End: Original strand, 36339778 - 36340091
Alignment:
Q  20 agaagcaaggtttaagttttcaatttgggtgataattgttggagaaatattcaaagtttccctttcgttcctattttgggaaatgatggtgtatattgta 119  Q
    |||||||||||   |||||| | ||| |||||||||||||||||| ||||||||||||||||||| |||||| || |  | |||||||||||  |||  |    
T  36339778 agaagcaaggtggcagtttttagttttggtgataattgttggagatatattcaaagtttccctttggttcctcttatatggaatgatggtgtgcatttga 36339877  T
Q  120 gtggaactattaactggttagctattcacagtgactacgcaccaattgaggttggaggaacatttaaaactcttattggtcctgttgagaaatgtgtgat 219  Q
    ||||| ||||||||||||| ||| ||    | |||| || | |||||||   ||||| ||||  |||| ||  ||||  || ||||||| |||  |||||    
T  36339878 gtggagctattaactggttggctctttctggcgacttcgtatcaattgattgtggagaaacaagtaaagcttatattcctcttgttgagcaattggtgat 36339977  T
Q  220 tgtttcgcttgatctttcgacagagacatacacacaatttttgcttcctaagggttttaaggagctgccttatgataagccatcagttcgagttctgatg 319  Q
    ||||||||||||||||||||| ||||||||||  || ||||||||||||   |||||||||||| |||| |  | | |||||||  |||| |||||||||    
T  36339978 tgtttcgcttgatctttcgacggagacatacaggcagtttttgcttcctgcaggttttaaggaggtgccatgcgttgagccatctcttcgggttctgatg 36340077  T
Q  320 gactgcctttgctt 333  Q
    ||||||||||||||    
T  36340078 gactgcctttgctt 36340091  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 201 - 277
Target Start/End: Complemental strand, 25901505 - 25901429
Alignment:
Q  201 ctgttgagaaatgtgtgattgtttcgcttgatctttcgacagagacatacacacaatttttgcttcctaagggtttt 277  Q
    |||||||| ||| ||||||||||||||||||||| || || ||| ||||||| || || ||||| |||  |||||||    
T  25901505 ctgttgagcaatatgtgattgtttcgcttgatctgtccactgagtcatacactcagttgttgctacctcggggtttt 25901429  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 201 - 277
Target Start/End: Complemental strand, 25915523 - 25915447
Alignment:
Q  201 ctgttgagaaatgtgtgattgtttcgcttgatctttcgacagagacatacacacaatttttgcttcctaagggtttt 277  Q
    |||||||| ||| ||||||||||||||||||||| || || ||| ||||||| || || ||||| |||  |||||||    
T  25915523 ctgttgagcaatatgtgattgtttcgcttgatctgtccactgagtcatacactcagttgttgctgcctcggggtttt 25915447  T

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Target: scaffold0707 (Bit Score: 55; Significance: 1e-22; HSPs: 2)
Name: scaffold0707
Description:

Target: scaffold0707; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 214 - 288
Target Start/End: Original strand, 5235 - 5309
Alignment:
Q  214 tgtgattgtttcgcttgatctttcgacagagacatacacacaatttttgcttcctaagggttttaaggagctgcc 288  Q
    |||||||||||| |||||||||||| | |||||||||||||||||||||||||||||||||||||| ||| ||||    
T  5235 tgtgattgtttcccttgatctttcgccggagacatacacacaatttttgcttcctaagggttttaatgaggtgcc 5309  T

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Target: scaffold0707; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 34 - 78
Target Start/End: Original strand, 5055 - 5099
Alignment:
Q  34 agttttcaatttgggtgataattgttggagaaatattcaaagttt 78  Q
    |||||||| ||||||||||| ||||||||||||||||||||||||    
T  5055 agttttcagtttgggtgatagttgttggagaaatattcaaagttt 5099  T

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Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 22 - 72
Target Start/End: Complemental strand, 17954086 - 17954036
Alignment:
Q  22 aagcaaggtttaagttttcaatttgggtgataattgttggagaaatattca 72  Q
    |||| ||||| |||||| || ||||||||||||||||||||||||||||||    
T  17954086 aagcgaggttaaagtttacagtttgggtgataattgttggagaaatattca 17954036  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 34 - 81
Target Start/End: Complemental strand, 39379469 - 39379422
Alignment:
Q  34 agttttcaatttgggtgataattgttggagaaatattcaaagtttccc 81  Q
    |||||||| |||||||||||||  ||||||||||||| ||||||||||    
T  39379469 agttttcagtttgggtgataatgtttggagaaatattgaaagtttccc 39379422  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000005; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 202 - 251
Target Start/End: Original strand, 26237459 - 26237508
Alignment:
Q  202 tgttgagaaatgtgtgattgtttcgcttgatctttcgacagagacataca 251  Q
    ||||||| ||| ||||||| |||||||||||||||||||| |||||||||    
T  26237459 tgttgagcaatttgtgattctttcgcttgatctttcgacaaagacataca 26237508  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 22 - 72
Target Start/End: Original strand, 24035416 - 24035466
Alignment:
Q  22 aagcaaggtttaagttttcaatttgggtgataattgttggagaaatattca 72  Q
    ||||| |||| || |||||||| | ||||||||||||||||||||||||||    
T  24035416 aagcagggttaaaattttcaatcttggtgataattgttggagaaatattca 24035466  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 33 - 91
Target Start/End: Original strand, 26237278 - 26237336
Alignment:
Q  33 aagttttcaatttgggtgataattgttggagaaatattcaaagtttccctttcgttcct 91  Q
    ||||||| | |||||||| ||| ||||||||||||||||||||||| ||  ||||||||    
T  26237278 aagtttttagtttgggtgttaactgttggagaaatattcaaagttttccggtcgttcct 26237336  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 214 - 251
Target Start/End: Original strand, 24016646 - 24016683
Alignment:
Q  214 tgtgattgtttcgcttgatctttcgacagagacataca 251  Q
    |||||||||||| |||||||||||||| ||||||||||    
T  24016646 tgtgattgtttctcttgatctttcgacggagacataca 24016683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 33 - 78
Target Start/End: Original strand, 26229881 - 26229926
Alignment:
Q  33 aagttttcaatttgggtgataattgttggagaaatattcaaagttt 78  Q
    ||||||| | |||||||| ||| |||||||||||||||||||||||    
T  26229881 aagtttttagtttgggtggtaactgttggagaaatattcaaagttt 26229926  T

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Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 202 - 251
Target Start/End: Original strand, 26256620 - 26256669
Alignment:
Q  202 tgttgagaaatgtgtgattgtttcgcttgatctttcgacagagacataca 251  Q
    ||||||| ||| ||||||| |||||||||||||||| || ||||||||||    
T  26256620 tgttgagcaatttgtgattatttcgcttgatctttcaacggagacataca 26256669  T

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Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 34 - 78
Target Start/End: Original strand, 24391079 - 24391123
Alignment:
Q  34 agttttcaatttgggtgataattgttggagaaatattcaaagttt 78  Q
    |||||| | |||||||||||||  |||||||||||||||||||||    
T  24391079 agtttttagtttgggtgataatatttggagaaatattcaaagttt 24391123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 204 - 252
Target Start/End: Original strand, 25376921 - 25376969
Alignment:
Q  204 ttgagaaatgtgtgattgtttcgcttgatctttcgacagagacatacac 252  Q
    ||||||||| ||||||||||||||| ||||| ||||| |||||||||||    
T  25376921 ttgagaaatatgtgattgtttcgctcgatctctcgactgagacatacac 25376969  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000005; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 34 - 82
Target Start/End: Original strand, 3557388 - 3557436
Alignment:
Q  34 agttttcaatttgggtgataattgttggagaaatattcaaagtttccct 82  Q
    |||||||| ||| |||||||||  ||||||||||||| |||||||||||    
T  3557388 agttttcagtttaggtgataatgtttggagaaatattgaaagtttccct 3557436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 201 - 277
Target Start/End: Complemental strand, 10571502 - 10571426
Alignment:
Q  201 ctgttgagaaatgtgtgattgtttcgcttgatctttcgacagagacatacacacaatttttgcttcctaagggtttt 277  Q
    |||||||| ||| |||||||||||| |||||||| || || ||| |||||||  |||| |||||||||  |||||||    
T  10571502 ctgttgagcaatatgtgattgtttcacttgatctctcaactgagtcatacactgaattgttgcttcctcggggtttt 10571426  T

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