View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12663_low_1 (Length: 501)
Name: NF12663_low_1
Description: NF12663
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12663_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 469; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 469; E-Value: 0
Query Start/End: Original strand, 18 - 490
Target Start/End: Complemental strand, 47076326 - 47075854
Alignment:
| Q |
18 |
aattgttgggctgcaatttatgaagaaggaagatgcaagaaacaaggacttcctttgagatatgtcaaacgaacacatgaagctgacgattttaccactg |
117 |
Q |
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| T |
47076326 |
aattgttgggctgcaatttatgaagaaggaagatgcaagaaacaaggacttcctttgagatatgtcaaacgaacacatgaagctgacgattttaccactg |
47076227 |
T |
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| Q |
118 |
ctttcttaaaggttggaaacaacagcatccaaagctcaaaggggtatgaaagaccttttgcttatccaatcaagactacaagtaacaaagcaatagtgca |
217 |
Q |
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| T |
47076226 |
ctttcttaaaggttggaaacaacagcatccaaagctcaaaggggtatgaaagaccttttgcttatccaatcaagactacaagtaacaaagcaatagtgca |
47076127 |
T |
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| Q |
218 |
tattattgttgttacctccttgtttagcatcatgtcgcgttcaacgatcgttatatccatccattacatgtacaaaattcgggtattaaagtataaaagg |
317 |
Q |
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| T |
47076126 |
tattattgttgttacctccttgtttagcatcatgtcgtgttcaacgatcgttatatccatccattacatgtacaaaattcgggtattaaagtataaaagg |
47076027 |
T |
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| Q |
318 |
ctaacagaaactgttaactttggagggcagaatgcagatttggctttgagaaggtttacatacaatgagctgagaagagcaacaaataatttcaaggaag |
417 |
Q |
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| T |
47076026 |
ctaacagaaactgttaactttggagggcagaatgcagatttggctttgagaaggtttacatacaatgagctgagaagagcaacaaataatttcaaggaag |
47075927 |
T |
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| Q |
418 |
agttgggtaagggtgcttttggaaaagtttacaaaggagccttaaacaaaggtaagagattgattgcagtgaa |
490 |
Q |
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| T |
47075926 |
agttgggtaagggtgcttttggaaaagtttacaaaggagccttaaacaaaggtaagagattgattgcagtgaa |
47075854 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 270 - 490
Target Start/End: Original strand, 47068259 - 47068476
Alignment:
| Q |
270 |
atatccatccattacatgtacaaaattcgggtattaaagtataaaaggctaacagaaactgttaactttggagggcagaatgcagatttggctttgagaa |
369 |
Q |
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| T |
47068259 |
atatccatccattacgtttacaagattcgggtattaaggtacaaaaggctaacggacactgggaacct---agggttgaatgaagaggtgactctgagaa |
47068355 |
T |
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| Q |
370 |
ggtttacatacaatgagctgagaagagcaacaaataatttcaaggaagagttgggtaagggtgcttttggaaaagtttacaaaggagccttaaacaaagg |
469 |
Q |
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| T |
47068356 |
ggttttcatataacgagctgaaaagagcaacaaatcattttaaggaagagttgggtaagggtgcttttggatcagtttacaaaggggccttaaacaaagg |
47068455 |
T |
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| Q |
470 |
taagagattgattgcagtgaa |
490 |
Q |
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| T |
47068456 |
taagagattgattgcagtgaa |
47068476 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 21 - 106
Target Start/End: Original strand, 47068004 - 47068089
Alignment:
| Q |
21 |
tgttgggctgcaatttatgaagaaggaagatgcaagaaacaaggacttcctttgagatatgtcaaacgaacacatgaagctgacga |
106 |
Q |
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| T |
47068004 |
tgttgggctgcactgtatgaggaagaaagatgcaagaaacaagggttgcctttgagatatgtcacaaggacacatgaagccgacga |
47068089 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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