View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12663_low_2 (Length: 408)

Name: NF12663_low_2
Description: NF12663
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12663_low_2
NF12663_low_2
[»] chr4 (2 HSPs)
chr4 (206-408)||(9337259-9337461)
chr4 (12-179)||(9337065-9337232)
[»] chr7 (7 HSPs)
chr7 (13-179)||(8666246-8666412)
chr7 (13-179)||(8672244-8672410)
chr7 (13-179)||(10495546-10495711)
chr7 (13-174)||(13334540-13334701)
chr7 (217-308)||(8666097-8666190)
chr7 (330-405)||(8672495-8672570)
chr7 (232-279)||(10511343-10511391)
[»] chr1 (2 HSPs)
chr1 (13-168)||(29214766-29214922)
chr1 (127-178)||(29464761-29464812)
[»] chr8 (1 HSPs)
chr8 (217-279)||(33236319-33236382)


Alignment Details
Target: chr4 (Bit Score: 183; Significance: 7e-99; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 183; E-Value: 7e-99
Query Start/End: Original strand, 206 - 408
Target Start/End: Original strand, 9337259 - 9337461
Alignment:
Q  206 ctgtattgtaaactctattctagttttagcagcatccttcaaagcttactttaggatctgatccttctcagactttattctagtgttgagtaaataatct 305  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||    
T  9337259 ctgtattgtaaactctattctagttttagcagcatccttcaaagcttactttatgatctgatccttctcagactctattctagtgttgagtaaataatct 9337358  T
Q  306 ttgaaacttgaaacctttctagagctttatgaattgacttgcctcatcatgtttatacgattaattatagggaagtgacatgaattcattctcttaatta 405  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||    
T  9337359 ttgaaacttgaaacctttatagagctttatgaattgacttgcctcatcatgtttatacgattaattacagggaagtgacattaattcattctcttaatta 9337458  T
Q  406 tat 408  Q
    |||    
T  9337459 tat 9337461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 12 - 179
Target Start/End: Original strand, 9337065 - 9337232
Alignment:
Q  12 agagagcatgtcgaagcaccttatatccaaggataataattttatttttcttggataagatttaaagtgatgtcttgcttttgaaattgctgaatgcaga 111  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9337065 agagagcatgtcgaagcaccttatatccaaggctaataattttatttttcttggataagatttaaagtgatgtcttgcttttgaaattgctgaatgcaga 9337164  T
Q  112 cctttagttttattatcattatctaatagcattgaagtttatgttaatgtttgtgtttcacatgttac 179  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9337165 cctttagttttattatcattatctaatagcattgaagtttatgttaatgtttgtgtttcacatgttac 9337232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 147; Significance: 2e-77; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 13 - 179
Target Start/End: Complemental strand, 8666412 - 8666246
Alignment:
Q  13 gagagcatgtcgaagcaccttatatccaaggataataattttatttttcttggataagatttaaagtgatgtcttgcttttgaaattgctgaatgcagac 112  Q
    ||||| |||||||| |||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||    
T  8666412 gagagaatgtcgaaacaccttatatccaaggctaataattttatttttcttggataagattttaagtgatgtcttgcttttgaaagtgctgaatgcagac 8666313  T
Q  113 ctttagttttattatcattatctaatagcattgaagtttatgttaatgtttgtgtttcacatgttac 179  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8666312 ctttagttttattatcattatctaatagcattgaagtttatgttaatgtttgtgtttcacatgttac 8666246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 13 - 179
Target Start/End: Original strand, 8672244 - 8672410
Alignment:
Q  13 gagagcatgtcgaagcaccttatatccaaggataataattttatttttcttggataagatttaaagtgatgtcttgcttttgaaattgctgaatgcagac 112  Q
    ||||| |||||||| |||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||    
T  8672244 gagagaatgtcgaaacaccttatatccaaggctaataattttatttttcttggataagattttaagtgatgtcttgcttttgaaagtgctgaatgcagac 8672343  T
Q  113 ctttagttttattatcattatctaatagcattgaagtttatgttaatgtttgtgtttcacatgttac 179  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8672344 ctttagttttattatcattatctaatagcattgaagtttatgttaatgtttgtgtttcacatgttac 8672410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 13 - 179
Target Start/End: Original strand, 10495546 - 10495711
Alignment:
Q  13 gagagcatgtcgaagcaccttatatccaaggataataattttatttttcttggataagatttaaagtgatgtcttgcttttgaaattgctgaatgcagac 112  Q
    |||||||||||||| |||||||||||||||  ||||||||||||||||||| ||||||||||||||||| ||||||||||||||| |||||||||||||     
T  10495546 gagagcatgtcgaaacaccttatatccaagactaataattttatttttctttgataagatttaaagtgaagtcttgcttttgaaagtgctgaatgcaga- 10495644  T
Q  113 ctttagttttattatcattatctaatagcattgaagtttatgttaatgtttgtgtttcacatgttac 179  Q
    ||||  |||||||||||||||||||||| ||||||||||||| |||| ||||||||| |||| ||||    
T  10495645 ctttgtttttattatcattatctaatagtattgaagtttatgataatatttgtgtttaacatattac 10495711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 13 - 174
Target Start/End: Original strand, 13334540 - 13334701
Alignment:
Q  13 gagagcatgtcgaagcaccttatatccaaggataataattttatttttcttggataagatttaaagtgatgtcttgcttttgaaattgctgaatgcagac 112  Q
    |||||||||||||| ||||| ||||| |||  ||||||||||||||||||  |||||||||| |||||||||||||||||||||| ||||||||||| ||    
T  13334540 gagagcatgtcgaaacacctgatatcaaagactaataattttatttttctgtgataagatttgaagtgatgtcttgcttttgaaagtgctgaatgcaaac 13334639  T
Q  113 ctttagttttattatcattatctaatagcattgaagtttatgttaatgtttgtgtttcacat 174  Q
     ||||||||||||||||||||||||||||||||||||||||| |||||||| ||||| ||||    
T  13334640 ttttagttttattatcattatctaatagcattgaagtttatgataatgtttctgtttaacat 13334701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 217 - 308
Target Start/End: Complemental strand, 8666190 - 8666097
Alignment:
Q  217 actctattctagttttagcagcatccttcaaagctt--actttaggatctgatccttctcagactttattctagtgttgagtaaataatctttg 308  Q
    ||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||  ||||||||| ||||||||||||||||||    
T  8666190 actctattctagttttagcagcatccttcaaagcttttactttaggatctgatccttctcagacactattctagttttgagtaaataatctttg 8666097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 330 - 405
Target Start/End: Original strand, 8672495 - 8672570
Alignment:
Q  330 ctttatgaattgacttgcctcatcatgtttatacgattaattatagggaagtgacatgaattcattctcttaatta 405  Q
    ||||||||||| ||||||||||||||||||||| | ||||||| ||||||||||||| ||||||||||||||||||    
T  8672495 ctttatgaatttacttgcctcatcatgtttatatgcttaattacagggaagtgacattaattcattctcttaatta 8672570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 232 - 279
Target Start/End: Original strand, 10511343 - 10511391
Alignment:
Q  232 tagcagcatccttcaaagcttactttaggat-ctgatccttctcagact 279  Q
    ||||||||||||||||||||| ||||||||| |||||||||||||||||    
T  10511343 tagcagcatccttcaaagcttgctttaggatcctgatccttctcagact 10511391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 93; Significance: 4e-45; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 13 - 168
Target Start/End: Original strand, 29214766 - 29214922
Alignment:
Q  13 gagagcatgtcgaagcaccttatatccaaggataataattttatttttcttggataagatttaaagtgatgtcttgcttttgaaattgctgaatgc-aga 111  Q
    |||||||||||||| |||||||||||||||  ||||||||||||||| ||| | ||||||||||||||||| |||||||||||||||||||||||| | |    
T  29214766 gagagcatgtcgaaacaccttatatccaagactaataattttattttcctttgttaagatttaaagtgatgccttgcttttgaaattgctgaatgcaaaa 29214865  T
Q  112 cctttagttttattatcattatctaatagcattgaagtttatgttaatgtttgtgtt 168  Q
    |||||| ||||||||||||| |||| |||||| |||| ||||| |||||||||||||    
T  29214866 cctttaattttattatcattgtctagtagcatcgaaggttatgataatgtttgtgtt 29214922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 127 - 178
Target Start/End: Complemental strand, 29464812 - 29464761
Alignment:
Q  127 tcattatctaatagcattgaagtttatgttaatgtttgtgtttcacatgtta 178  Q
    ||||||||||||||||||||||||||||  ||||| ||||||  ||||||||    
T  29464812 tcattatctaatagcattgaagtttatggcaatgtatgtgttgaacatgtta 29464761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 217 - 279
Target Start/End: Complemental strand, 33236382 - 33236319
Alignment:
Q  217 actctattctagttttagcagcatccttcaaagcttactttaggat-ctgatccttctcagact 279  Q
    ||||| |||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||    
T  33236382 actcttttctagttttagcagcatccttcaaagcttgctttaggatcctgatccttctcagact 33236319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University