View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12663_low_4 (Length: 319)
Name: NF12663_low_4
Description: NF12663
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12663_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 278; Significance: 1e-155; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 10 - 307
Target Start/End: Complemental strand, 4910044 - 4909747
Alignment:
| Q |
10 |
attaaaaaggttacctgagaatagcgaacatgaccatgctgcaaatttgaagttttcactattgtttcccacttgacattgcttgatgatatattagaat |
109 |
Q |
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| T |
4910044 |
attaaaaaggttacctgagaatagcgaacatgaccatgctgcaaatttgaagttttcactattgtttcccacttgacattgcttgatgatatattagaat |
4909945 |
T |
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| Q |
110 |
cttttcttttagcatgagattgagtcccttgatttgaatgcattaaagaattcttgagggaatttataggcagggcgcgccaaagccaagactcagaagg |
209 |
Q |
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| T |
4909944 |
catttcttttaggatgagattgagtcccttgatttgaatgcatgaaagaattcttgagggaatttataggcagggcgcgccaaagccaagactcagaagg |
4909845 |
T |
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| Q |
210 |
tgattttggcaatggtggttgaagtggagaaccattagctaacacaatttgcttgttgttggcatctgaatcttcagaaaatgtcttttgcacaggtt |
307 |
Q |
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| T |
4909844 |
tgattttggcaatggtggttgaagtggagaaccattagctaacacaatttgcttgttgttggtatctgaatcttcagaaaatgtcttttgcactggtt |
4909747 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 10 - 144
Target Start/End: Complemental strand, 4916209 - 4916075
Alignment:
| Q |
10 |
attaaaaaggttacctgagaatagcgaacatgaccatgctgcaaatttgaagttttcactattgtttcccacttgacattgcttgatgatatattagaat |
109 |
Q |
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| T |
4916209 |
attaaaaaagttacttgcgaatagcgaacatgaccatgctgcaaatttgaagttttcactattgtttcccatttcacattgattgatgatgtattagaat |
4916110 |
T |
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| Q |
110 |
cttttcttttagcatgagattgagtcccttgattt |
144 |
Q |
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| T |
4916109 |
catttcttttagcatgagattgagccccttgattt |
4916075 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 38 - 80
Target Start/End: Original strand, 35868992 - 35869034
Alignment:
| Q |
38 |
catgaccatgctgcaaatttgaagttttcactattgtttccca |
80 |
Q |
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| T |
35868992 |
catgatcatgatgcaaatttgaagttttcactattgtttccca |
35869034 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 190 - 227
Target Start/End: Original strand, 35869147 - 35869184
Alignment:
| Q |
190 |
caaagccaagactcagaaggtgattttggcaatggtgg |
227 |
Q |
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| T |
35869147 |
caaagccacgactcagaaggtgactttggcaatggtgg |
35869184 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 38 - 80
Target Start/End: Original strand, 24443193 - 24443235
Alignment:
| Q |
38 |
catgaccatgctgcaaatttgaagttttcactattgtttccca |
80 |
Q |
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| T |
24443193 |
catgatcatgatgcaaatttgaagttttcactattgtttccca |
24443235 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 190 - 227
Target Start/End: Original strand, 24443348 - 24443385
Alignment:
| Q |
190 |
caaagccaagactcagaaggtgattttggcaatggtgg |
227 |
Q |
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| T |
24443348 |
caaagccacgactcagaaggtgactttggcaatggtgg |
24443385 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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