View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12664_high_1 (Length: 578)

Name: NF12664_high_1
Description: NF12664
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12664_high_1
NF12664_high_1
[»] chr3 (6 HSPs)
chr3 (1-395)||(48532281-48532678)
chr3 (443-563)||(48532726-48532846)
chr3 (1-115)||(48529286-48529400)
chr3 (257-341)||(48529488-48529572)
chr3 (443-525)||(48535539-48535621)
chr3 (158-211)||(48529419-48529472)
[»] chr1 (1 HSPs)
chr1 (4-114)||(4020610-4020720)


Alignment Details
Target: chr3 (Bit Score: 327; Significance: 0; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 1 - 395
Target Start/End: Original strand, 48532281 - 48532678
Alignment:
Q  1 tgtaactccttcaaaaagatggatccattttctgctctcattcctttggctgccaacaacaaaaagtctatagacttcaccatttctcttattttctcca 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||    
T  48532281 tgtaactccttcaaaaagatggatccattttctgctctcattcctttggccgccaacatcaaaaagtctatagacttcaccatttctcttattttctcca 48532380  T
Q  101 atagggctgtcaaataaataaatnnnnnnn---catagtaataagcatgtctttgtatcattttagttcaacaaatcatgtcagatcagtatgttcacct 197  Q
    |||||||||||||||||| |||           ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  48532381 atagggctgtcaaataaaaaaaaaaaaaaaaaacatagtaataagcatgtctttgtatcattttagttcaacaaattatgtcagatcagtatgttcacct 48532480  T
Q  198 gaactggatctccagttgtatgaactcctgcatacaaaacatcctcctgtatttgtaaagtgaagtgagaaataatgagagattcgtgattttcaaattt 297  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  48532481 gaactggatctccagttgtatgaactcttgcatacaaaacatcctcctgtatttgtaaagtgaagtgagaaataatgagagatttgtgattttcaaattt 48532580  T
Q  298 gatgatccgtaagtgaaaacagcgggaattcagcgaataaagttgagattgcaatatacgaagataaaatgaaacataaatttggggttagagttacc 395  Q
    ||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48532581 gatgatctgtaaatgaaaacagcgggaattcagcgaataaagttgagattgcaatatacgaagataaaatgaaacataaatttggggttagagttacc 48532678  T

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Target: chr3; HSP #2
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 443 - 563
Target Start/End: Original strand, 48532726 - 48532846
Alignment:
Q  443 gttagggagttgagaagcttacaatacttagcttgatgattagtgttagtgaaacgaaagatggaggtaaccaccgaagagagagtaaattatggaagag 542  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  48532726 gttagggagttgagaagcttacaatacttagcttgatgattagtgttagtgaaccgaaagatggaggtaaccaccgaagagagagtaaattatggaagag 48532825  T
Q  543 taaaaagaagaggaagaattt 563  Q
    |||||||||||||||||||||    
T  48532826 taaaaagaagaggaagaattt 48532846  T

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Target: chr3; HSP #3
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 1 - 115
Target Start/End: Original strand, 48529286 - 48529400
Alignment:
Q  1 tgtaactccttcaaaaagatggatccattttctgctctcattcctttggctgccaacaacaaaaagtctatagacttcaccatttctcttattttctcca 100  Q
    ||||||||||||||||||||||||||||||||| |||||||| || | ||  |||||| |||| |||||||||||||||||| |||||||||||||||||    
T  48529286 tgtaactccttcaaaaagatggatccattttctcctctcatttctcttgccaccaacatcaaagagtctatagacttcaccacttctcttattttctcca 48529385  T
Q  101 atagggctgtcaaat 115  Q
    | |||||||||||||    
T  48529386 acagggctgtcaaat 48529400  T

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Target: chr3; HSP #4
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 257 - 341
Target Start/End: Original strand, 48529488 - 48529572
Alignment:
Q  257 gtgaagtgagaaataatgagagattcgtgattttcaaatttgatgatccgtaagtgaaaacagcgggaattcagcgaataaagtt 341  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||    
T  48529488 gtgaagtgagaaataatgagagattcatgattttcaaatttgatgatccataaatgaaaacagcgggaattcagcgaataaagtt 48529572  T

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Target: chr3; HSP #5
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 443 - 525
Target Start/End: Original strand, 48535539 - 48535621
Alignment:
Q  443 gttagggagttgagaagcttacaatacttagcttgatgattagtgttagtgaaacgaaagatggaggtaaccaccgaagagag 525  Q
    |||||||||||||||||||||||||||||||||||||| || |||||||| || |||||||||||||||||||||||||||||    
T  48535539 gttagggagttgagaagcttacaatacttagcttgatgctttgtgttagtaaaccgaaagatggaggtaaccaccgaagagag 48535621  T

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Target: chr3; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 158 - 211
Target Start/End: Original strand, 48529419 - 48529472
Alignment:
Q  158 ttttagttcaacaaatcatgtcagatcagtatgttcacctgaactggatctcca 211  Q
    |||||||  ||||||| |||||||||||||||||||||||||||||||||||||    
T  48529419 ttttagtcgaacaaattatgtcagatcagtatgttcacctgaactggatctcca 48529472  T

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Target: chr1 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 4 - 114
Target Start/End: Original strand, 4020610 - 4020720
Alignment:
Q  4 aactccttcaaaaagatggatccattttctgctctcattcctttggctgccaacaacaaaaagtctatagacttcaccatttctcttattttctccaata 103  Q
    |||||||||||| |||||||||||||| || |||||||| || ||||  || ||| |||| |||||||||||||||||| || |||| |||||||||| |    
T  4020610 aactccttcaaacagatggatccatttcctcctctcatttctctggccaccgacatcaaacagtctatagacttcaccacttttcttgttttctccaaca 4020709  T
Q  104 gggctgtcaaa 114  Q
    |||||||||||    
T  4020710 gggctgtcaaa 4020720  T

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