View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12664_high_2 (Length: 442)
Name: NF12664_high_2
Description: NF12664
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12664_high_2 |
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| [»] scaffold0234 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 339; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 58 - 427
Target Start/End: Complemental strand, 12699942 - 12699572
Alignment:
| Q |
58 |
cccttcggctgactgtattcactgatgtgaacaatgtttgttgtaaagagcactaatattacgaaattgtcatcgcgtttatcttttccctcagtcatt- |
156 |
Q |
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| T |
12699942 |
cccttcggctgactgtattcactgatgtgaacaatgtttgttgtaaagagcactaatattacgaaattgtcaccgcgtttatcttttccctcagtcattt |
12699843 |
T |
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| Q |
157 |
agttccacagatgtgaaaactatttagtatctattattcctcttaggcatttcctcagctgatgtgaaaaccttctccaaagttctttcccttcaagtat |
256 |
Q |
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| T |
12699842 |
agttccacagatgtgaaaactatttagtatctattattcctcttaggcatttcctcagctggtgtgaaaaccttctccaaagttctttcccttcaagtat |
12699743 |
T |
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| Q |
257 |
ttctccactgatgtgaatgccctgatgtcaaatgtaaattttctagtagtgtttcatcttttacatgagctatagagcgaaaattcccaaagctttgctt |
356 |
Q |
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| T |
12699742 |
ttctccactgatgtgaaagccctgatgtcaaatgtaaattttctagtagtgtttcatcttttacatgagctatagagcgaaaattcccaaagccttgctt |
12699643 |
T |
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| Q |
357 |
ccactctttgaagccttcggaaacagagtaaccttaagctttggcaagaaatatcataacacagttgctca |
427 |
Q |
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| T |
12699642 |
ccactctttgaagcctttggaaacacagtaaccttaagctttggcaagaaatatcataacacagttgctca |
12699572 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 141 - 241
Target Start/End: Original strand, 2598668 - 2598768
Alignment:
| Q |
141 |
ttttccctcagtcattagttccacagatgtgaaaactatttagtatctattattcctcttaggcatttcctcagctgatgtgaaaaccttctccaaagtt |
240 |
Q |
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| T |
2598668 |
ttttccctcatgcattagttccactgatgtcaaaactctttagcatttatttttcccttcagtcatttcctcaactgatgggaacaacttcatcaaagtt |
2598767 |
T |
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| Q |
241 |
c |
241 |
Q |
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| T |
2598768 |
c |
2598768 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 240 - 308
Target Start/End: Complemental strand, 51741484 - 51741416
Alignment:
| Q |
240 |
tctttcccttcaagtatttctccactgatgtgaatgccctgatgtcaaatgtaaattttctagtagtgt |
308 |
Q |
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| T |
51741484 |
tctttaccctcatgtatttttgcactgatgtgaaaaccctgatgtcaaatgtcttttttctagtagtgt |
51741416 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0234 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: scaffold0234
Description:
Target: scaffold0234; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 109 - 258
Target Start/End: Complemental strand, 5199 - 5049
Alignment:
| Q |
109 |
actaatattacgaaattgtcatcgcgtttatcttttccctcagtcattagttccacagatgtgaaaactatttagtatctattattcctcttaggcattt |
208 |
Q |
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| T |
5199 |
actaatattacaaaattgccaccgcgtttatgtttcccctcatgcattagttccactgatgtcaaaactcttgggcttctacttttcccctcagccattt |
5100 |
T |
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| Q |
209 |
cctcagctgatgtgaaaaccttctccaaagt-tctttcccttcaagtattt |
258 |
Q |
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| T |
5099 |
cttcacctgaagtgaaaacctcatccaaagtatctttcccatcaggtattt |
5049 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 242 - 307
Target Start/End: Complemental strand, 24167224 - 24167159
Alignment:
| Q |
242 |
tttcccttcaagtatttctccactgatgtgaatgccctgatgtcaaatgtaaattttctagtagtg |
307 |
Q |
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| T |
24167224 |
tttcccctcatgtatttctccactgatgtgaaatccctattgttaaatgtatattttctagtagtg |
24167159 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 109 - 238
Target Start/End: Original strand, 9809427 - 9809556
Alignment:
| Q |
109 |
actaatattacgaaattgtcatcgcgtttatcttttccctcagtcattagttccacagatgtgaaaactatttagtatctattattcctcttaggcattt |
208 |
Q |
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| T |
9809427 |
actaatattacgaaattgccaccgcgtttatgtttcccctcatgcattagttccacttatgtcaaaactcctgggcttctatttttcccctcagccattt |
9809526 |
T |
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| Q |
209 |
cctcagctgatgtgaaaaccttctccaaag |
238 |
Q |
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| T |
9809527 |
cttcacctgaagtcaaaaccttgtccaaag |
9809556 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 263 - 307
Target Start/End: Complemental strand, 31713489 - 31713445
Alignment:
| Q |
263 |
actgatgtgaatgccctgatgtcaaatgtaaattttctagtagtg |
307 |
Q |
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| T |
31713489 |
actgatgtgaaaaccctgatgtcaaatgtatattttctagtagtg |
31713445 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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