View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12664_high_3 (Length: 318)
Name: NF12664_high_3
Description: NF12664
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12664_high_3 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 284; Significance: 1e-159; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 15 - 302
Target Start/End: Complemental strand, 5744960 - 5744673
Alignment:
| Q |
15 |
cacagaaattgttgagcttatctagtaattgatgattttcattccttagccaaacaacttgtgaccaaagctcatcaagctgtttttgtttcctcattcg |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5744960 |
cacagaaattgttgagcttatctagtaattgatgattttcattccttagccaaacaacttgtgaccaaagctcatcaagctgtttttgtttcctcattcg |
5744861 |
T |
|
| Q |
115 |
cgaccggcgtgctgactctcggttcgataccattcttcgatgttttctttcgttgattagacctaggttttgttcgtccgcttcgtcggaagttgagttg |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5744860 |
cgaccggcgtgctgactctcggttcgataccattcttcgatgttttctttcgttgattagacctaggttttgttcgtccgcttcgtcggaagttgagttg |
5744761 |
T |
|
| Q |
215 |
ctgcttatgcatgacgatggaggactgaagtcttggagaatttgaatagggttttggttgaaaccatagaattggttggagagttttg |
302 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5744760 |
ctgcttatgcatgaggatggaggactgaagtcttggagaatttgaatagggttttggttgaaaccatagaattggttggagagttttg |
5744673 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 82; Significance: 1e-38; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 43 - 228
Target Start/End: Complemental strand, 6066938 - 6066753
Alignment:
| Q |
43 |
ttgatgattttcattccttagccaaacaacttgtgaccaaagctcatcaagctgtttttgtttcctcattcgcgaccggcgtgctgactctcggttcgat |
142 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||| ||||| || |||||||| || || || || ||||| || ||||| ||| |
|
|
| T |
6066938 |
ttgatgattttcattccttagccaaagaacttgtgaccaaagctcatcaaggtgtttctgcttcctcatgcgtgaacgacgcgctgattcgcggtttgat |
6066839 |
T |
|
| Q |
143 |
accattcttcgatgttttctttcgttgattagacctaggttttgttcgtccgcttcgtcggaagttgagttgctgcttatgcatga |
228 |
Q |
| |
|
| ||| |||| ||||| || || ||||| |||| ||||||||||| || ||||| || |||||||||||||||||||||||||| |
|
|
| T |
6066838 |
atcatccttctgtgtttcctctcattgatgagactaaggttttgttcatctgcttcatcagaagttgagttgctgcttatgcatga |
6066753 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University