View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12664_low_2 (Length: 469)
Name: NF12664_low_2
Description: NF12664
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12664_low_2 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 449; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 449; E-Value: 0
Query Start/End: Original strand, 1 - 453
Target Start/End: Complemental strand, 11461995 - 11461543
Alignment:
| Q |
1 |
aggactcattgattcacgcacataacccatgctgatcaattcttcaatttgccgttgcaactcttttgtctcctccggattacacctataggcagctttg |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
11461995 |
aggactcattgattcacgcacataacccatgctgatcaattcttcaatttgccgttgcaactcttttgtctcctccggattacacctataggccgctttg |
11461896 |
T |
|
| Q |
101 |
tttggtaatggagctccgggaattagatcaatttgatgctcaattccacgaataggtggcaaaccaattggtaattcaattggaaacacatcttcatact |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11461895 |
tttggtaatggagctccgggaattagatcaatttgatgctcaattccacgaataggtggcaaaccaattggtaattcaattggaaacacatcttcatact |
11461796 |
T |
|
| Q |
201 |
cacccaaaacagcctccaattgttgtttaagaggggtttcgatatcatcctgtttagtattctttgcaatcaacaggtaaactaattcaccattatcaat |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11461795 |
cacccaaaacagcctccaattgttgtttaagaggggtttcgatatcatcctgtttagtattctttgcaatcaacaggtaaactaattcaccattatcaat |
11461696 |
T |
|
| Q |
301 |
agcatttttcacttcattttcagtagcaaacatagtgaggctaggctttttacctctttgtgtagtcatggaacgaacttcacttgatgccataggtttc |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11461695 |
agcatttttcacttcattttcagtagcaaacatagtgaggctaggctttttacctctttgtgtagtcatggaacgaacttcacttgatgccataggtttc |
11461596 |
T |
|
| Q |
401 |
agcaccatcttcttgcctttgtagttcaattcatactcatttgatcttcctct |
453 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11461595 |
agcaccatcttcttgcctttgtagttcaattcatactcatttgatcttcctct |
11461543 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University