View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12665_high_1 (Length: 528)
Name: NF12665_high_1
Description: NF12665
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12665_high_1 |
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Alignment Details
Target: chr1 (Bit Score: 467; Significance: 0; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 467; E-Value: 0
Query Start/End: Original strand, 16 - 518
Target Start/End: Original strand, 26785569 - 26786070
Alignment:
| Q |
16 |
caaatatgagataaaaaatctaacattttcaaaacaaataaaatctacactgcggtgtagattttattgtttcacttttaagtagctatatgtaattttg |
115 |
Q |
| |
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||||||||||||| |||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
26785569 |
caaatatgagatacaaaatctaacattttcaaaacaaataaaatctacaccgcagtgtagattttattgtttcacttttaagtagctatgtgtaattttg |
26785668 |
T |
|
| Q |
116 |
tgttcatggcaaatttgtccgaatcacgtttgtcaccatgttttagaaaaatatattttaaaacttcaacaaaatcacaattaatgttaattcaagcatg |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
26785669 |
tgttcatggcaaatttgtccgaatcacgtttgtcaccatgttttagaaaaatatcttttaaaacttcaacaaaatcagaattaatgttaattcaagcatg |
26785768 |
T |
|
| Q |
216 |
cactaaatatatcaccgctatatgctatgccgcaacttataggttaatgcgattctagaagaattaagggaaaaagagaaattaccaaacttccagcgag |
315 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||| |
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| T |
26785769 |
cactaaatatatcaccgctatatgctatgccgcaacttataggttaatgcgattctagaagaatt-agggaaaaagagtaattaccaaacttccagcgag |
26785867 |
T |
|
| Q |
316 |
cctgaacgagaccaatttcaggattattgacaaggaaaggaatggtttggcagaggaaatcaggttcaggttgaaaatcagcatcaaagatggcaacata |
415 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26785868 |
cctgaacgagaccaatttcaggattattgacaaggaaaggaatggtttggcagaggaaatcaggttcaggttgaaaatcagcatcaaagatggcaacata |
26785967 |
T |
|
| Q |
416 |
ttcacattgtaggacatgactatgtttcattccctcctttagagcaccagctttgtacccatttctgttgtccctaacttcatactttatgttcacacct |
515 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26785968 |
ttcacattgtaggacatgactatgtttcattccctcctttagagcaccagctttgtacccatttctgttgtccctaacttcatactttatgttcacacct |
26786067 |
T |
|
| Q |
516 |
ttg |
518 |
Q |
| |
|
||| |
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|
| T |
26786068 |
ttg |
26786070 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 288 - 518
Target Start/End: Original strand, 26822481 - 26822711
Alignment:
| Q |
288 |
aaagagaaattaccaaacttccagcgagcctgaacgagaccaatttcaggattattgacaaggaaaggaatggtttggcagaggaaatcaggttcaggtt |
387 |
Q |
| |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| || ||| ||| ||| || ||||||||||||| |
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| T |
26822481 |
aaagagtaattaccaaacttccagcgagcctgaacgagaccaatttcaggattattgacaagaaaagggatcgttcggcggagaaagtcaggttcaggtt |
26822580 |
T |
|
| Q |
388 |
gaaaatcagcatcaaagatggcaacatattcacattgtaggacatgactatgtttcattccctcctttagagcaccagctttgtacccatttctgttgtc |
487 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26822581 |
gaaaatcagcatcaaagatggcaacatattcacattgtaggacatgactatgtttcattccctcctttagagcaccagctttgtacccatttctgttgtc |
26822680 |
T |
|
| Q |
488 |
cctaacttcatactttatgttcacacctttg |
518 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
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|
| T |
26822681 |
cctaacttcatactttatgttcacacctttg |
26822711 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 298 - 518
Target Start/End: Original strand, 26791590 - 26791810
Alignment:
| Q |
298 |
taccaaacttccagcgagcctgaacgagaccaatttcaggattattgacaaggaaaggaatggtttggcagaggaaatcaggttcaggttgaaaatcagc |
397 |
Q |
| |
|
||||||||||||||||||| |||||||||||||| ||||||||||||||||| ||||| |||||| || ||| |||||||||||||||||||||||||| |
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|
| T |
26791590 |
taccaaacttccagcgagcttgaacgagaccaatctcaggattattgacaagaaaagggatggttcggaggagaaaatcaggttcaggttgaaaatcagc |
26791689 |
T |
|
| Q |
398 |
atcaaagatggcaacatattcacattgtaggacatgactatgtttcattccctcctttagagcaccagctttgtacccatttctgttgtccctaacttca |
497 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26791690 |
atcaaagatggcaacatattcacattgtaggacatgactatgtttcattccctcctttagagcaccagctttgtacccatttctgttgtccctaacttca |
26791789 |
T |
|
| Q |
498 |
tactttatgttcacacctttg |
518 |
Q |
| |
|
||||||||||||||||||||| |
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|
| T |
26791790 |
tactttatgttcacacctttg |
26791810 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 145; E-Value: 4e-76
Query Start/End: Original strand, 293 - 525
Target Start/End: Original strand, 26832563 - 26832795
Alignment:
| Q |
293 |
gaaattaccaaacttccagcgagcctgaacgagaccaatttcaggattattgacaaggaaaggaatggtttggcagaggaaatcaggttcaggttgaaaa |
392 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||| ||||||||||| ||||||||||| |||||| | || || ||||||||||| ||||||||| |
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|
| T |
26832563 |
gaaattaccaaacttccagcgagcctgaacaagaccaatatcaggattattaacaaggaaagggatggttcgccaaagaaaatcaggttctggttgaaaa |
26832662 |
T |
|
| Q |
393 |
tcagcatcaaagatggcaacatattcacattgtaggacatgactatgtttcattccctcctttagagcaccagctttgtacccatttctgttgtccctaa |
492 |
Q |
| |
|
|||||||||||||| |||||||| ||||||||| |||| |||||||||||||||||||||| ||||| |||||||| |||||||| |||||||||| |
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| T |
26832663 |
tcagcatcaaagatagcaacataatcacattgtttcacatagctatgtttcattccctcctttaatgcacctgctttgtaaccatttctattgtccctaa |
26832762 |
T |
|
| Q |
493 |
cttcatactttatgttcacacctttgcttctcc |
525 |
Q |
| |
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||||||||||||| ||||||||||||||||||| |
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| T |
26832763 |
cttcatactttatattcacacctttgcttctcc |
26832795 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 381 - 525
Target Start/End: Complemental strand, 41546355 - 41546211
Alignment:
| Q |
381 |
tcaggttgaaaatcagcatcaaagatggcaacatattcacattgtaggacatgactatgtttcattccctcctttagagcaccagctttgtacccatttc |
480 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||| || ||||| ||||| |||||||| || || ||||||||||||||||| ||||||| |
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| T |
41546355 |
tcaggttgaaaatcagcatcaaagatggcaacatagtcacaaagtttgacatagctatgcttcattccttctttaagagcaccagctttgtaaccatttc |
41546256 |
T |
|
| Q |
481 |
tgttgtccctaacttcatactttatgttcacacctttgcttctcc |
525 |
Q |
| |
|
| || ||||| | |||||||||||||| | ||||| ||||||| |
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| T |
41546255 |
tattttcccttatctcatactttatgtttatgccttttcttctcc |
41546211 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 52 - 83
Target Start/End: Complemental strand, 26785636 - 26785605
Alignment:
| Q |
52 |
aataaaatctacactgcggtgtagattttatt |
83 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
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|
| T |
26785636 |
aataaaatctacactgcggtgtagattttatt |
26785605 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 62; Significance: 1e-26; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 372 - 521
Target Start/End: Complemental strand, 41917588 - 41917439
Alignment:
| Q |
372 |
aaatcaggttcaggttgaaaatcagcatcaaagatggcaacatattcacattgtaggacatgactatgtttcattccctcctttagagcaccagctttgt |
471 |
Q |
| |
|
|||||||| || |||||||||||||||||||| || ||||||| |||||||| |||| ||||| |||||||| || |||| ||| || ||||||| |
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| T |
41917588 |
aaatcaggctctggttgaaaatcagcatcaaatattgcaacatgatcacattgcttcacatagctatgcttcattccttcttttaaagcccctgctttgt |
41917489 |
T |
|
| Q |
472 |
acccatttctgttgtccctaacttcatactttatgttcacacctttgctt |
521 |
Q |
| |
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| |||||||| ||||||||||||||||||||||| ||||| ||||||||| |
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| T |
41917488 |
atccatttctattgtccctaacttcatactttatattcactcctttgctt |
41917439 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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