View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12665_high_10 (Length: 236)
Name: NF12665_high_10
Description: NF12665
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12665_high_10 |
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Alignment Details
Target: chr4 (Bit Score: 163; Significance: 3e-87; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 15 - 222
Target Start/End: Original strand, 38729637 - 38729840
Alignment:
| Q |
15 |
aagaacagtgtaagtgcttaggcctggccttaaacctgcattagtcattgaattgtacagtttgatggcatgatcaatttgtccagacgcagcatgcatt |
114 |
Q |
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| T |
38729637 |
aagaacagtataagtgctcaggcctggccttaaacctgcattagtcattgaattgtacagtttcatagcatgatcgatttgtccagacgcagcatgcatt |
38729736 |
T |
|
| Q |
115 |
tccaagagacaagcatacgtagatggagttggtagaaatccagctttctccatatatatctgaaaatgcagacatatcaatatcaagcttccctgatttt |
214 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
38729737 |
tccaagagacaagcatatgtagatggagttggtagaaatccagctttctcc----atatctgaaaatgcagacatagcaatatcaagcttccctgatttt |
38729832 |
T |
|
| Q |
215 |
gcatgtga |
222 |
Q |
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|||||||| |
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| T |
38729833 |
gcatgtga |
38729840 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 144; Significance: 7e-76; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 144; E-Value: 7e-76
Query Start/End: Original strand, 15 - 219
Target Start/End: Complemental strand, 385905 - 385705
Alignment:
| Q |
15 |
aagaacagtgtaagtgcttaggcctggccttaaacctgcattagtcattgaattgtacagtttgatggcatgatcaatttgtccagacgcagcatgcatt |
114 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| || | |||||||||| |
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| T |
385905 |
aagaacagtgtaagtgcttaggcctggccttaaacctgcattagtcattgaattgtacagtttcatggcatgatcaatttgtccggatgaagcatgcatt |
385806 |
T |
|
| Q |
115 |
tccaagagacaagcatacgtagatggagttggtagaaatccagctttctccatatatatctgaaaatgcagacatatcaatatcaagcttccctgatttt |
214 |
Q |
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||||| |||||||| || |||||| ||||| |||||||||||||||||||| || |||||||||||||||||| ||||||||||||||||||||||| |
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| T |
385805 |
tccaatagacaagcgtatgtagatagagttagtagaaatccagctttctcc----atgtctgaaaatgcagacatagcaatatcaagcttccctgatttt |
385710 |
T |
|
| Q |
215 |
gcatg |
219 |
Q |
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||||| |
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| T |
385709 |
gcatg |
385705 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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