View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12665_high_11 (Length: 235)

Name: NF12665_high_11
Description: NF12665
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12665_high_11
NF12665_high_11
[»] chr3 (3 HSPs)
chr3 (21-217)||(11294466-11294662)
chr3 (85-124)||(30187933-30187972)
chr3 (85-121)||(10948356-10948392)
[»] chr2 (4 HSPs)
chr2 (19-214)||(35430784-35430979)
chr2 (28-217)||(3250696-3250885)
chr2 (86-124)||(33035669-33035707)
chr2 (85-153)||(21829834-21829902)
[»] chr8 (1 HSPs)
chr8 (85-217)||(18004953-18005085)
[»] chr1 (4 HSPs)
chr1 (26-217)||(4693465-4693656)
chr1 (28-124)||(42910669-42910765)
chr1 (26-122)||(43913494-43913590)
chr1 (85-124)||(15175245-15175284)
[»] scaffold1243 (1 HSPs)
scaffold1243 (26-124)||(1345-1443)
[»] chr7 (3 HSPs)
chr7 (42-124)||(34149051-34149133)
chr7 (42-124)||(34177991-34178073)
chr7 (42-216)||(38432277-38432451)
[»] chr6 (3 HSPs)
chr6 (44-124)||(15160837-15160917)
chr6 (26-122)||(15472486-15472582)
chr6 (85-124)||(15184426-15184465)
[»] chr4 (1 HSPs)
chr4 (43-124)||(17403163-17403244)


Alignment Details
Target: chr3 (Bit Score: 165; Significance: 2e-88; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 21 - 217
Target Start/End: Original strand, 11294466 - 11294662
Alignment:
Q  21 ctctaccttgttgtgttctactgttttgcaggatcatgttcttgacatatggcgatgagtgttggatcctattaacggttactccgttaaggggacttat 120  Q
    ||||| |||| |||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  11294466 ctctatcttgctgtgttctactgttttgcaggatcatgttcttgacagatggcgatgagtgctggatcctattaacggttactccgttaaggggacttat 11294565  T
Q  121 cagtttctaacacttccttacacatcaatggagcgtggtctttatgatgcagcatggctgaagtaggtttcgctaaaggttgttatatttgtttggc 217  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||| ||||||||||||||    
T  11294566 cagtttctaacacttcctgacacatcaatggagcgtggtctttatgatgcatcatggctgaagcaggtttcgctaaaggttgctatatttgtttggc 11294662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 85 - 124
Target Start/End: Complemental strand, 30187972 - 30187933
Alignment:
Q  85 gatcctattaacggttactccgttaaggggacttatcagt 124  Q
    ||||||||||| ||||| ||||||||||||||||||||||    
T  30187972 gatcctattaatggttattccgttaaggggacttatcagt 30187933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 85 - 121
Target Start/End: Complemental strand, 10948392 - 10948356
Alignment:
Q  85 gatcctattaacggttactccgttaaggggacttatc 121  Q
    ||||| ||||| |||||||||||||||||||||||||    
T  10948392 gatcccattaatggttactccgttaaggggacttatc 10948356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 104; Significance: 5e-52; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 19 - 214
Target Start/End: Original strand, 35430784 - 35430979
Alignment:
Q  19 tgctctaccttgttgtgttctactgttttgcaggatcatgttcttgacatatggcgatgagtgttggatcctattaacggttactccgttaaggggactt 118  Q
    |||||| | ||| ||||| ||| ||||||||||||||||||| |||||| |||| | ||     |||||||||||||||||||||| |||||||||||||    
T  35430784 tgctcttctttgatgtgtgctattgttttgcaggatcatgttattgacagatggtgttggactctggatcctattaacggttactctgttaaggggactt 35430883  T
Q  119 atcagtttctaacacttccttacacatcaatggagcgtggtctttatgatgcagcatggctgaagtaggtttcgctaaaggttgttatatttgttt 214  Q
    |||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||| ||||| |||| ||| ||||||||  |||||||||||    
T  35430884 atcagtttcttacacttcctgacacatcaatggagcgtggtctttatgatgcagcatggttgaagcaggtctcgttaaaggtttctatatttgttt 35430979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 28 - 217
Target Start/End: Complemental strand, 3250885 - 3250696
Alignment:
Q  28 ttgttgtgttctactgttttgcaggatcatgttcttgacatatggcgatgagtgttggatcctattaacggttactccgttaaggggacttatcagtttc 127  Q
    ||||||||||||  ||||||||||||||||||  |||||| |||| | |||||  | |||||||||||||||||||| |||||||  |||||||||||||    
T  3250885 ttgttgtgttctgttgttttgcaggatcatgtgattgacagatggtgttgagttctagatcctattaacggttactcggttaaggaaacttatcagtttc 3250786  T
Q  128 taacacttccttacacatcaatggagcgtggtctttatgatgcagcatggctgaagtaggtttcgctaaaggttgttatatttgtttggc 217  Q
    | ||||||||| |||||||||||||||||||||||| || |||||| ||| ||||| ||||| || ||||||||  ||||||| ||||||    
T  3250785 ttacacttcctaacacatcaatggagcgtggtctttttggtgcagcttggttgaagcaggttccgttaaaggtttctatatttatttggc 3250696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 86 - 124
Target Start/End: Complemental strand, 33035707 - 33035669
Alignment:
Q  86 atcctattaacggttactccgttaaggggacttatcagt 124  Q
    |||||||||| ||||| ||||||||||||||||||||||    
T  33035707 atcctattaatggttattccgttaaggggacttatcagt 33035669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 85 - 153
Target Start/End: Original strand, 21829834 - 21829902
Alignment:
Q  85 gatcctattaacggttactccgttaaggggacttatcagtttctaacacttccttacacatcaatggag 153  Q
    ||||||||||| ||||| ||||||||||| |||||||||| ||| ||  | ||  ||||||||||||||    
T  21829834 gatcctattaatggttattccgttaagggtacttatcagtatcttacgatgcccgacacatcaatggag 21829902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 69; Significance: 4e-31; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 85 - 217
Target Start/End: Complemental strand, 18005085 - 18004953
Alignment:
Q  85 gatcctattaacggttactccgttaaggggacttatcagtttctaacacttccttacacatcaatggagcgtggtctttatgatgcagcatggctgaagt 184  Q
    |||||||||||||||||| |||||||||||||||||||| |||| || ||  || ||||||||| ||||| |||||||||||||||||| ||| |||||     
T  18005085 gatcctattaacggttacaccgttaaggggacttatcagcttcttacgctaactgacacatcaacggagcttggtctttatgatgcagcgtggttgaagc 18004986  T
Q  185 aggtttcgctaaaggttgttatatttgtttggc 217  Q
    ||||| |  |||||||| |||||||||||||||    
T  18004985 aggttccattaaaggtttttatatttgtttggc 18004953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 60; Significance: 1e-25; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 26 - 217
Target Start/End: Original strand, 4693465 - 4693656
Alignment:
Q  26 ccttgttgtgttctactgttttgcaggatcatgttcttgacatatggcgatgagtgttggatcctattaacggttactccgttaaggggacttatcagtt 125  Q
    |||||||||||  || |||||||||||||||||||| |||||  ||||| ||||| |||||||||||||||| |||||| |||||||| ||||||||||     
T  4693465 ccttgttgtgtaatattgttttgcaggatcatgttcatgacaggtggcggtgagttttggatcctattaacgattactcggttaagggaacttatcagta 4693564  T
Q  126 tctaacacttccttacacatcaatggagcgtggtctttatgatgcagcatggctgaagtaggtttcgctaaaggttgttatatttgtttggc 217  Q
    ||| || |  ||| |||||||  |||||||| ||||||| || |  |  ||||||||| ||||| || |||||||    |||||||||||||    
T  4693565 tctcacgcaacctgacacatctgtggagcgtagtctttacgacgttgtgtggctgaaggaggttccgttaaaggtatcaatatttgtttggc 4693656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 28 - 124
Target Start/End: Original strand, 42910669 - 42910765
Alignment:
Q  28 ttgttgtgttctactgttttgcaggatcatgttcttgacatatggcgatgagtgttggatcctattaacggttactccgttaaggggacttatcagt 124  Q
    |||||||||  || |||||||||||| ||||||||||| |  ||||| |  || |||||||||||||| |||||||| |||||||||||||||||||    
T  42910669 ttgttgtgtaatattgttttgcaggaccatgttcttgataggtggcggttggttttggatcctattaatggttactcagttaaggggacttatcagt 42910765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 26 - 122
Target Start/End: Complemental strand, 43913590 - 43913494
Alignment:
Q  26 ccttgttgtgttctactgttttgcaggatcatgttcttgacatatggcgatgagtgttggatcctattaacggttactccgttaaggggacttatca 122  Q
    |||||||||||  || |||||||||||||||||||| |||||  ||||| |  || ||||| | |||||| |||||||| ||||| |||||||||||    
T  43913590 ccttgttgtgtaatattgttttgcaggatcatgttcatgacaggtggcggttggttttggagcatattaatggttactcagttaaagggacttatca 43913494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 85 - 124
Target Start/End: Original strand, 15175245 - 15175284
Alignment:
Q  85 gatcctattaacggttactccgttaaggggacttatcagt 124  Q
    |||||||||| ||||||||||||||||| |||||||||||    
T  15175245 gatcctattagcggttactccgttaaggagacttatcagt 15175284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1243 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: scaffold1243
Description:

Target: scaffold1243; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 26 - 124
Target Start/End: Original strand, 1345 - 1443
Alignment:
Q  26 ccttgttgtgttctactgttttgcaggatcatgttcttgacatatggcgatgagtgttggatcctattaacggttactccgttaaggggacttatcagt 124  Q
    |||||||||||  || | |||||||||||||||||||||| |  ||||| ||  |  | ||||||||||||||||||||||||||||||||||||||||    
T  1345 ccttgttgtgtcatattattttgcaggatcatgttcttgataggtggcggtggattcttgatcctattaacggttactccgttaaggggacttatcagt 1443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 42 - 124
Target Start/End: Complemental strand, 34149133 - 34149051
Alignment:
Q  42 tgttttgcaggatcatgttcttgacatatggcgatgagtgttggatcctattaacggttactccgttaaggggacttatcagt 124  Q
    |||||||||||||||||||| |||||  ||||| || || ||||||||||| ||||||||||| || ||| ||||||||||||    
T  34149133 tgttttgcaggatcatgttcatgacacgtggcggtgggttttggatcctatcaacggttactcagtcaagaggacttatcagt 34149051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 42 - 124
Target Start/End: Original strand, 34177991 - 34178073
Alignment:
Q  42 tgttttgcaggatcatgttcttgacatatggcgatgagtgttggatcctattaacggttactccgttaaggggacttatcagt 124  Q
    |||||||||||||||||||| |||||  ||||| || || ||||||||||| ||||||||||| || ||| ||||||||||||    
T  34177991 tgttttgcaggatcatgttcatgacacgtggcggtgggttttggatcctatcaacggttactcagtcaagaggacttatcagt 34178073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 42 - 216
Target Start/End: Original strand, 38432277 - 38432451
Alignment:
Q  42 tgttttgcaggatcatgttcttgacatatggcgatgagtgttggatcctattaacggttactccgttaaggggacttatcagtttctaacacttccttac 141  Q
    |||||||||| | |||||||||||||  ||| | || ||  ||||||||||||||||||| | ||||||||||  ||| |||| ||| ||  |  || ||    
T  38432277 tgttttgcagaaccatgttcttgacaggtggtgttgggttatggatcctattaacggttatttcgttaagggggtttaccagtatctcacgttatctgac 38432376  T
Q  142 acatcaatggagcgtggtctttatgatgcagcatggctgaagtaggtttcgctaaaggttgttatatttgtttgg 216  Q
    || ||  ||||||| ||  ||| ||||| ||||||||||||| ||| | || ||||||||   ||||||||||||    
T  38432377 acctctctggagcgaggcttttttgatgtagcatggctgaagcagggtccgttaaaggtttcaatatttgtttgg 38432451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 44 - 124
Target Start/End: Complemental strand, 15160917 - 15160837
Alignment:
Q  44 ttttgcaggatcatgttcttgacatatggcgatgagtgttggatcctattaacggttactccgttaaggggacttatcagt 124  Q
    |||||||||||||||||||||| |  ||||| ||  |  | |||||||||||| |||||||||||||||||||||||||||    
T  15160917 ttttgcaggatcatgttcttgataggtggcggtggattcttgatcctattaactgttactccgttaaggggacttatcagt 15160837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 26 - 122
Target Start/End: Original strand, 15472486 - 15472582
Alignment:
Q  26 ccttgttgtgttctactgttttgcaggatcatgttcttgacatatggcgatgagtgttggatcctattaacggttactccgttaaggggacttatca 122  Q
    |||||||||||  || | |||||||||||||||||||||| |  ||||| ||| | ||  ||| ||||||| ||||||| |||||||||||||||||    
T  15472486 ccttgttgtgtcatattattttgcaggatcatgttcttgataggtggcggtgaattttttatcatattaactgttactctgttaaggggacttatca 15472582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 85 - 124
Target Start/End: Complemental strand, 15184465 - 15184426
Alignment:
Q  85 gatcctattaacggttactccgttaaggggacttatcagt 124  Q
    ||||||||||||||||||||| ||||||||||||||||||    
T  15184465 gatcctattaacggttactccattaaggggacttatcagt 15184426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 43 - 124
Target Start/End: Original strand, 17403163 - 17403244
Alignment:
Q  43 gttttgcaggatcatgttcttgacatatggcgatgagtgttggatcctattaacggttactccgttaaggggacttatcagt 124  Q
    ||||||||||||||||||| |||||  ||||| |  || |||||||||| ||| |||||||  ||||||||||||| |||||    
T  17403163 gttttgcaggatcatgttcatgacaggtggcggttggttttggatcctactaatggttacttagttaaggggacttgtcagt 17403244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University