View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12665_high_12 (Length: 231)
Name: NF12665_high_12
Description: NF12665
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12665_high_12 |
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Alignment Details
Target: chr4 (Bit Score: 127; Significance: 1e-65; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 74 - 212
Target Start/End: Original strand, 4465796 - 4465933
Alignment:
| Q |
74 |
ataccacatacatgtacaatgtgctgtttggattactccttaataatttctcttcatagctccttatgactccacttatttttaacctcctcttgcaact |
173 |
Q |
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| T |
4465796 |
ataccacatacatgtacaatgtgctgtttggattactc-tgaataatttctcttcatagctccttatgactccacttatttttaacctcctcttgcaact |
4465894 |
T |
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| Q |
174 |
tgcaaggcattcactttcatatcaagtgtatgtttcaaa |
212 |
Q |
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| T |
4465895 |
tgcaaggcattcactttcatatcaagtgtatgtttcaaa |
4465933 |
T |
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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 11 - 43
Target Start/End: Original strand, 4378430 - 4378462
Alignment:
| Q |
11 |
gtagcaaaggctaaccaatttgaaatcaatgac |
43 |
Q |
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||||||||||||||||||||||||||||||||| |
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| T |
4378430 |
gtagcaaaggctaaccaatttgaaatcaatgac |
4378462 |
T |
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