View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12665_high_2 (Length: 516)

Name: NF12665_high_2
Description: NF12665
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12665_high_2
NF12665_high_2
[»] chr4 (2 HSPs)
chr4 (21-516)||(31514560-31515055)
chr4 (166-284)||(48727503-48727622)
[»] chr2 (1 HSPs)
chr2 (416-510)||(34765595-34765689)
[»] chr1 (1 HSPs)
chr1 (198-284)||(43040166-43040253)
[»] chr3 (2 HSPs)
chr3 (165-211)||(2586979-2587025)
chr3 (165-205)||(2586914-2586954)
[»] chr5 (2 HSPs)
chr5 (166-229)||(22701351-22701414)
chr5 (145-189)||(13258370-13258414)
[»] chr8 (1 HSPs)
chr8 (155-193)||(32839126-32839164)
[»] chr7 (1 HSPs)
chr7 (172-212)||(40991549-40991589)


Alignment Details
Target: chr4 (Bit Score: 441; Significance: 0; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 441; E-Value: 0
Query Start/End: Original strand, 21 - 516
Target Start/End: Original strand, 31514560 - 31515055
Alignment:
Q  21 cttacaaatagatttcagggaaaaacttatgacacagtttgaatcaaacacgtatgtataattcactgggtttatgctaaaagttattattacactgcac 120  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31514560 cttacaaatagatttcagggaaaaacttatgacacagtttgaatcaaacacgtatgtataattcactgggtttatgctaaaagttattattacactgcac 31514659  T
Q  121 caactccaacaacannnnnnnnn--caaaacaaattgggggaggggaaaattattattgattaaagtgacattaaatgtcattttacaaccgtcccaatg 218  Q
    |||||||||||||            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31514660 caactccaacaactattttttttttcaaaacaaattgggggaggggaaaattattattgattaaagtgacattaaatgtcattttacaaccgtcccaatg 31514759  T
Q  219 gagatttgaactccatctcttgaggttacatggtcagactcttacattgagctgacacctcatggaactccaacagagaatgacatactaatacagaaat 318  Q
    ||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31514760 gagatttgaact--atctcttgaggttacatggtcagactcttacattgagctgacacctcatggaactccaacagagaatgacatactaatacagaaat 31514857  T
Q  319 attaattttaaattcattgagatccataaataccgacaatgattgtagaacacgaataaaatgaggaatgaaaaaccagagcacttgtaagacgaattta 418  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31514858 attaattttaaattcattgagatccataactaccgacaatgattgtagaacacgaataaaatgaggaatgaaaaaccagagcacttgtaagacgaattta 31514957  T
Q  419 ccatgttgctgccccttggagacgagcactaccatgagtttcaagtaatagattaactgtatgaatctgtatagtcattccatctgcaatctgaaggt 516  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31514958 ccatgttgctgccccttggagacgagcactaccatgagtttcaagtaatagattaactgtatgaatctgtatagtcattccatctgcaatctgaaggt 31515055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 166 - 284
Target Start/End: Complemental strand, 48727622 - 48727503
Alignment:
Q  166 aaattattattgattaaagtgacattaaatgtc-attttacaaccgtcccaatggagatttgaactccatctcttgaggttacatggtcagactctt-ac 263  Q
    ||||||||||  | |||||||||||||| || | ||||||||||| | || |||  ||||||||||||||| ||||| |||||  ||||| ||||||  |    
T  48727622 aaattattatgaactaaagtgacattaa-tgactattttacaaccattcccatgaggatttgaactccatcccttgaagttactaggtcaaactcttgtc 48727524  T
Q  264 attgagctgacacctcatgga 284  Q
    | || ||||||||||||||||    
T  48727523 actgtgctgacacctcatgga 48727503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 416 - 510
Target Start/End: Complemental strand, 34765689 - 34765595
Alignment:
Q  416 ttaccatgttgctgccccttggagacgagcactaccatgagtttcaagtaatagattaactgtatgaatctgtatagtcattccatctgcaatct 510  Q
    ||||||||||||| || ||||  |||||| || |||  ||||||| || |||||||||||||| ||||||||||||||||| |||||||||||||    
T  34765689 ttaccatgttgctcccgcttgtcgacgagaaccaccgcgagtttctagcaatagattaactgtttgaatctgtatagtcatgccatctgcaatct 34765595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 198 - 284
Target Start/End: Original strand, 43040166 - 43040253
Alignment:
Q  198 cattttacaaccgtcccaatggagatttgaactccatctcttgaggttacatggtcagactctta-cattgagctgacacctcatgga 284  Q
    |||||||||||| ||||   || |||||||||||| ||||||||||||||| |||||| |||||| || ||||||| |||||||||||    
T  43040166 cattttacaaccttccccggggggatttgaactccgtctcttgaggttacaaggtcaggctcttaccactgagctggcacctcatgga 43040253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 165 - 211
Target Start/End: Original strand, 2586979 - 2587025
Alignment:
Q  165 aaaattattattgattaaagtgacattaaatgtcattttacaaccgt 211  Q
    |||||||||||| |||||||||||||||| ||| |||||||||||||    
T  2586979 aaaattattattaattaaagtgacattaattgttattttacaaccgt 2587025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 165 - 205
Target Start/End: Original strand, 2586914 - 2586954
Alignment:
Q  165 aaaattattattgattaaagtgacattaaatgtcattttac 205  Q
    |||||||||||| |||||||||||||||| ||| |||||||    
T  2586914 aaaattattattaattaaagtgacattaattgttattttac 2586954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 166 - 229
Target Start/End: Complemental strand, 22701414 - 22701351
Alignment:
Q  166 aaattattattgattaaagtgacattaaatgtcattttacaaccgtcccaatggagatttgaac 229  Q
    ||||||||||| |||||||||||| ||| | ||||||||||||||| |||| || ||| |||||    
T  22701414 aaattattattaattaaagtgacactaattatcattttacaaccgttccaaaggggatatgaac 22701351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 145 - 189
Target Start/End: Original strand, 13258370 - 13258414
Alignment:
Q  145 aaaacaaattgggggaggggaaaattattattgattaaagtgaca 189  Q
    |||| ||||||||| || |||||||||||||| ||||||||||||    
T  13258370 aaaaaaaattggggaagtggaaaattattattaattaaagtgaca 13258414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 155 - 193
Target Start/End: Complemental strand, 32839164 - 32839126
Alignment:
Q  155 gggggaggggaaaattattattgattaaagtgacattaa 193  Q
    |||||| ||||||||||||||| ||||||||||||||||    
T  32839164 gggggaagggaaaattattattaattaaagtgacattaa 32839126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 172 - 212
Target Start/End: Complemental strand, 40991589 - 40991549
Alignment:
Q  172 ttattgattaaagtgacattaaatgtcattttacaaccgtc 212  Q
    |||||||||||||||||| |||  |||||||||||||||||    
T  40991589 ttattgattaaagtgacactaatagtcattttacaaccgtc 40991549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University