View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12665_high_4 (Length: 427)

Name: NF12665_high_4
Description: NF12665
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12665_high_4
NF12665_high_4
[»] chr3 (16 HSPs)
chr3 (103-411)||(749865-750174)
chr3 (192-411)||(675269-675485)
chr3 (16-199)||(678900-679083)
chr3 (16-95)||(750811-750890)
chr3 (194-337)||(2485112-2485259)
chr3 (16-95)||(9564654-9564733)
chr3 (161-222)||(1429705-1429766)
chr3 (284-368)||(2495517-2495597)
chr3 (179-221)||(7332267-7332309)
chr3 (307-351)||(2634006-2634049)
chr3 (45-88)||(2632910-2632953)
chr3 (277-351)||(2641879-2641951)
chr3 (16-87)||(2642522-2642593)
chr3 (277-351)||(2649372-2649444)
chr3 (279-320)||(7332157-7332198)
chr3 (173-221)||(2642017-2642065)
[»] scaffold0019 (1 HSPs)
scaffold0019 (103-368)||(2001-2270)


Alignment Details
Target: chr3 (Bit Score: 298; Significance: 1e-167; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 103 - 411
Target Start/End: Complemental strand, 750174 - 749865
Alignment:
Q  103 tttctcagcaagtgatcttgtacaggatttcttgtgtgggacaattaagatcacacgatcttacgatttgaatcgagatttt-gataaccttgatagtat 201  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  750174 tttctcagcaagtgatcttgtacaggatttcttgtgtgggacaattaagatcacacgatcttacgatttgaatcgagatttttgataaccttgatagtat 750075  T
Q  202 gcacaaattcaaattgacaataaacattaaagtttttatgttttagcttttgtttgtgatagtgggtaacggtctacaagataactgattattcttgttg 301  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  750074 gcacaaattcaaattgacaataaccattaaagtttttatgttttagcttttgtttgtgatagtgggtaacggtctacaagataactgattattcttgttg 749975  T
Q  302 aatgattaatgtgaaaatgaaagttttgaatattttggtattttatttgcgagggttttaaagttgtgaaaatgatattattgaattcttcttacacaca 401  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  749974 aatgattaatgtgaaaatgaaagttttgaatattttggtattttatttgcgagggttttaaagttgtgaaaatgatattattgaattcttcttacacaca 749875  T
Q  402 cgtaacacat 411  Q
    ||||||||||    
T  749874 cgtaacacat 749865  T

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Target: chr3; HSP #2
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 192 - 411
Target Start/End: Complemental strand, 675485 - 675269
Alignment:
Q  192 ttgatagtatgcacaaattcaaattgacaataaacattaaagtttttatgttttagcttttgtttgtgatagtgggtaacggtctacaagataactgatt 291  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  675485 ttgatagtatgcacaaattcaaattgacaataaacattaaagtttttatgttttagcttttgtttgtgatagtgggtaacagtctacaagataactgatt 675386  T
Q  292 attcttgttgaatgattaatgtgaaaatgaaagttttgaatattttggtattttatttgcgagggttttaaagttgtgaaaatgatattattgaattctt 391  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   |    
T  675385 attcttgttgaatgattaatgtgaaaatgaaagttttgaatattttggtattttatttgcgagggttttaaagttgtgaaaatgatattattgaat---t 675289  T
Q  392 cttacacacacgtaacacat 411  Q
    ||||||||||||||||||||    
T  675288 cttacacacacgtaacacat 675269  T

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Target: chr3; HSP #3
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 16 - 199
Target Start/End: Complemental strand, 679083 - 678900
Alignment:
Q  16 aacatgttattattctcgtggtaactttatgtgttgttagtgctaaattaatcatattgtacattaagttttatattttgtacaggatttctcagcaagt 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  679083 aacatgttattattctcgtggtaactttatgtgttgttagtgctaaattaatcatattgtacattaagttttatattttgtacaggatttctcagcaagt 678984  T
Q  116 gatcttgtacaggatttcttgtgtgggacaattaagatcacacgatcttacgatttgaatcgagattttgataaccttgatagt 199  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  678983 gatcttgtacaggatttcttgtgtgggacaattaagatcacacgatcttacgatttgaatcgagattttgataaccttgatagt 678900  T

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Target: chr3; HSP #4
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 16 - 95
Target Start/End: Complemental strand, 750890 - 750811
Alignment:
Q  16 aacatgttattattctcgtggtaactttatgtgttgttagtgctaaattaatcatattgtacattaagttttatattttg 95  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  750890 aacatgttattattctcgtggtaactttatgtgttgttagtgctaaattaatcatattgtacattaagttttatattttg 750811  T

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Target: chr3; HSP #5
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 194 - 337
Target Start/End: Original strand, 2485112 - 2485259
Alignment:
Q  194 gatagtatgcacaaattcaaattgacaataaacat---taaagtttttatgttttagct-tttgtttgtgatagtgggtaacggtctacaagataactga 289  Q
    |||||||| |||||||||||||||||||||| | |   || ||||||| ||||||| || |||  || ||||||||  ||| ||  ||||||||||||||    
T  2485112 gatagtattcacaaattcaaattgacaataaccttggctacagtttttttgttttatctctttccttttgatagtgtttaatggattacaagataactga 2485211  T
Q  290 ttattcttgttgaatgattaatgtgaaaatgaaagttttgaatatttt 337  Q
    |||||||||||||||| ||||||  ||||||||||||||| |||||||    
T  2485212 ttattcttgttgaatgtttaatgcaaaaatgaaagttttgtatatttt 2485259  T

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Target: chr3; HSP #6
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 16 - 95
Target Start/End: Complemental strand, 9564733 - 9564654
Alignment:
Q  16 aacatgttattattctcgtggtaactttatgtgttgttagtgctaaattaatcatattgtacattaagttttatattttg 95  Q
    ||||| |||||| | || ||| ||||||||||||||||| ||||||||||||||||| ||||| |||||||| |||||||    
T  9564733 aacattttattaatttcttgggaactttatgtgttgttaatgctaaattaatcatatagtacaataagttttttattttg 9564654  T

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Target: chr3; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 161 - 222
Target Start/End: Complemental strand, 1429766 - 1429705
Alignment:
Q  161 tcttacgatttgaatcgagattttgataaccttgatagtatgcacaaattcaaattgacaat 222  Q
    ||||||||||| ||||| |||||||| ||||||||||  |||||||||||||||||||||||    
T  1429766 tcttacgatttaaatcgtgattttgaaaaccttgatatcatgcacaaattcaaattgacaat 1429705  T

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Target: chr3; HSP #8
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 284 - 368
Target Start/End: Original strand, 2495517 - 2495597
Alignment:
Q  284 aactgattattcttgttgaatgattaatgtgaaaatgaaagttttgaatattttggtattttatttgcgagggttttaaagttgt 368  Q
    |||||||||||||||   ||||||||||||||||| |||||||||| ||||||| |  |||||||||| || |||||||||||||    
T  2495517 aactgattattcttg---aatgattaatgtgaaaacgaaagttttgtatattttagacttttatttgc-agtgttttaaagttgt 2495597  T

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Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 179 - 221
Target Start/End: Complemental strand, 7332309 - 7332267
Alignment:
Q  179 gattttgataaccttgatagtatgcacaaattcaaattgacaa 221  Q
    ||||||| ||||||||||||||||||| |||||||||||||||    
T  7332309 gattttggtaaccttgatagtatgcactaattcaaattgacaa 7332267  T

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Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 307 - 351
Target Start/End: Original strand, 2634006 - 2634049
Alignment:
Q  307 ttaatgtgaaaatgaaagttttgaatattttggtattttatttgc 351  Q
    ||||||||||||||||||||||| ||| |||||||||||||||||    
T  2634006 ttaatgtgaaaatgaaagttttgtata-tttggtattttatttgc 2634049  T

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Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 45 - 88
Target Start/End: Original strand, 2632910 - 2632953
Alignment:
Q  45 tgtgttgttagtgctaaattaatcatattgtacattaagtttta 88  Q
    ||||||| ||||||| |||||||||||||||||||| |||||||    
T  2632910 tgtgttgctagtgctgaattaatcatattgtacattcagtttta 2632953  T

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Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 277 - 351
Target Start/End: Complemental strand, 2641951 - 2641879
Alignment:
Q  277 acaagataactgattattcttgttgaatgattaatgtgaaaatgaaagttttgaatattttggtattttatttgc 351  Q
    |||||||||| | || ||||||||||||||||||| ||||||||||  ||||  |||||||||| ||| ||||||    
T  2641951 acaagataacggtttcttcttgttgaatgattaatctgaaaatgaa--ttttttatattttggtgtttcatttgc 2641879  T

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Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 16 - 87
Target Start/End: Complemental strand, 2642593 - 2642522
Alignment:
Q  16 aacatgttattattctcgtggtaactttatgtgttgttagtgctaaattaatcatattgtacattaagtttt 87  Q
    |||||||||||| | || ||||||||||||   ||| ||||||| |||||||||||| ||||||| ||||||    
T  2642593 aacatgttattaatttcttggtaactttattccttgctagtgctgaattaatcatatagtacattcagtttt 2642522  T

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Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 277 - 351
Target Start/End: Complemental strand, 2649444 - 2649372
Alignment:
Q  277 acaagataactgattattcttgttgaatgattaatgtgaaaatgaaagttttgaatattttggtattttatttgc 351  Q
    |||||||||| | || ||||||||||||||||||| ||||||||||  ||||  |||||||||| ||| ||||||    
T  2649444 acaagataacggtttcttcttgttgaatgattaatctgaaaatgaa--ttttttatattttggtgtttcatttgc 2649372  T

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Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 279 - 320
Target Start/End: Complemental strand, 7332198 - 7332157
Alignment:
Q  279 aagataactgattattcttgttgaatgattaatgtgaaaatg 320  Q
    |||||||||| ||||||||||| |||||||||| ||||||||    
T  7332198 aagataactgtttattcttgttaaatgattaatctgaaaatg 7332157  T

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Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 173 - 221
Target Start/End: Complemental strand, 2642065 - 2642017
Alignment:
Q  173 aatcgagattttgataaccttgatagtatgcacaaattcaaattgacaa 221  Q
    ||||| |||||||||||| ||||| ||||||||  ||||||||||||||    
T  2642065 aatcgtgattttgataacattgattgtatgcactgattcaaattgacaa 2642017  T

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Target: scaffold0019 (Bit Score: 103; Significance: 4e-51; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 103 - 368
Target Start/End: Original strand, 2001 - 2270
Alignment:
Q  103 tttctcagcaagtgatcttgtacaggatttcttgtgtgggacaattaagatcacacgatcttacgatttgaatcgagattttgataaccttgatagtatg 202  Q
    |||| |||||| |||| |||||  |||| | ||||| ||||| ||||||||| || |||||||| |||| ||||| || |||||||||| ||||||||||    
T  2001 tttcacagcaaatgattttgtattggatctattgtgggggaccattaagatcgcatgatcttacaatttaaatcgtgactttgataaccctgatagtatg 2100  T
Q  203 cacaaattcaaattgacaataaacat--taaagttttt-atgttttagcttttgtttgt-gatagtgggtaacggtctacaagataactgattattcttg 298  Q
    |||| |||||| || ||||| | |||  ||  |||||| ||||||||||| ||| || | |||||||  ||| ||  |||||||||||||||||||||||    
T  2101 cacagattcaagttaacaatgatcatcttatggttttttatgttttagctcttgcttcttgatagtgtttaatggattacaagataactgattattcttg 2200  T
Q  299 ttgaatgattaatgtgaaaatgaaagttttgaatattttggtattttatttgcgagggttttaaagttgt 368  Q
    ||||||||||||||| ||||||||||||||| |||||||||| |||||||||| ||||||||||||||||    
T  2201 ttgaatgattaatgtcaaaatgaaagttttgtatattttggtcttttatttgcaagggttttaaagttgt 2270  T

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