View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12665_high_5 (Length: 420)
Name: NF12665_high_5
Description: NF12665
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12665_high_5 |
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Alignment Details
Target: chr4 (Bit Score: 342; Significance: 0; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 16 - 373
Target Start/End: Complemental strand, 44879919 - 44879562
Alignment:
| Q |
16 |
cagagagggtgagaaaatgcaaagaacagagagtgaaatggttatattcttacctaaggatgagccgaacatcacaaaacacaacatatagatcgctgat |
115 |
Q |
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| T |
44879919 |
cagacagggtgagaaaatgcaaagaacagagagtgaaatggttaaattcttacctaaggatgagccgaacatcacaaaacacaacatatagatcgctgat |
44879820 |
T |
|
| Q |
116 |
aatgcaagaaaataaccatatgtaatcaaccaatatggcccgtcaccaagaccatgcattttcatcatcattcttaatttttgctgcttctcataaacca |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||| |
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| T |
44879819 |
aatgcaagaaaataaccatatgtaatcaaccaatatggcccgtcaccaagaccatgcattttcatcatgattcttaatttttgttgcttctcataaacca |
44879720 |
T |
|
| Q |
216 |
gtgatgtcagaataacctacataaaatgcacatagagcttaattatgttgaacagataaatacacttgaacatatattctgttgtgtttgcattattgga |
315 |
Q |
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| T |
44879719 |
gtgatgtcagaataacctacataaaatgcacatagagcttaattatgttgaacagataaatacacttgaacatatattctgttgtgtttgcattattgga |
44879620 |
T |
|
| Q |
316 |
tgtcagatacaattattgactttgaatacgtgtcatatattgttccatgagcagaaaa |
373 |
Q |
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| T |
44879619 |
tgtcagatacaattattgactttgaatacgtgtcatatattgttccatgagcagaaaa |
44879562 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 26 - 373
Target Start/End: Complemental strand, 44862119 - 44861771
Alignment:
| Q |
26 |
gagaaaatgcaaagaacagagagtgaaatggttatattcttacctaaggatgagccgaacatcacaaaacacaacatatagatcgctgataatgcaagaa |
125 |
Q |
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| T |
44862119 |
gagaaaatgccaagaacagagaatgaaatagttatattcttacctaagactgagccgaatatcacgaaacacaatatgtagatcacagataaggcaagaa |
44862020 |
T |
|
| Q |
126 |
aataaccatatgtaatcaaccaatatggcccgtcaccaagaccatgcattttcatcatcattcttaatttttgctgcttctcataaaccagtgatgtcag |
225 |
Q |
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|||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||| |
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| T |
44862019 |
aatatccatatgaaatcaaccaatatggcccgtcaccaagaccatgcattttcatcatgattcttaatttttgttgcttctcataaaccagtgatgtcag |
44861920 |
T |
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| Q |
226 |
aataacctacataaaatgc--acatagagcttaattatgttgaacagataaatacacttgaacatatattctgttgtgtttgcattattggatgtcagat |
323 |
Q |
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| T |
44861919 |
aataacctgcataaaatgcatatatagagtttactcgtgttgaagagataaatacactaaaacatttattctgttgtgtttg-attattggatgttagat |
44861821 |
T |
|
| Q |
324 |
acaattattgactttgaatacgtgtcatatattgttccatgagcagaaaa |
373 |
Q |
| |
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|||||| |||| |||||||| ||||| ||||||||||||||||||||| |
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| T |
44861820 |
acaattgttgaaattgaatactagtcatgtattgttccatgagcagaaaa |
44861771 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 46 - 373
Target Start/End: Complemental strand, 44848439 - 44848115
Alignment:
| Q |
46 |
gagtgaaatggttatattcttacctaaggatgagccgaacatcacaaaacacaacatatagatcgctgataatgcaagaaaataaccatatgtaatcaac |
145 |
Q |
| |
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|||| ||||||||||||||||||| ||| |||||| ||| |||||||||| || || |||||| | ||||| ||||||||||| || |||| ||||| | |
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| T |
44848439 |
gagttaaatggttatattcttaccaaagactgagccaaacgtcacaaaacataaaatgtagatcaccgataaggcaagaaaatagccgtatgaaatcatc |
44848340 |
T |
|
| Q |
146 |
caatatggcccgtcaccaagaccatgcattttcatcatcattcttaatttttgctgcttctcataaaccagtgatgtcagaataacctacataaaatgca |
245 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44848339 |
caatatggcccgtcaccaagaccatgcattttcatcatgattcttaatttttgttgcttctcataaaccagtgatgtcagaataacctacataaaatgca |
44848240 |
T |
|
| Q |
246 |
catagagcttaattatgttgaacagataaatacacttgaacatatattctgttgtgtttgcattattggatgtcagatacaattattgactttgaatacg |
345 |
Q |
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||| ||| ||||| |||||||||||||||||||| | ||||||||||||| |||| |||||||| ||||| |||||||||| ||||||||||||||| |
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| T |
44848239 |
catggaggttaatcatgttgaacagataaatacattacaacatatattctgctgtgcttgcatta---gatgttagatacaattgttgactttgaatacg |
44848143 |
T |
|
| Q |
346 |
tgtcatatattgttccatgagcagaaaa |
373 |
Q |
| |
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||||| ||||||||||||||||||||| |
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| T |
44848142 |
agtcatgtattgttccatgagcagaaaa |
44848115 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 31 - 245
Target Start/End: Complemental strand, 44836483 - 44836269
Alignment:
| Q |
31 |
aatgcaaagaacagagagtgaaatggttatattcttacctaaggatgagccgaacatcacaaaacacaacatatagatcgctgataatgcaagaaaataa |
130 |
Q |
| |
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||||| ||||| ||||||| |||| || |||||||||| ||| ||||||||| ||||||||||||||||| || ||||||||||| |||||||||||| |
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| T |
44836483 |
aatgccaagaatagagagtcaaataattttattcttacccaagactgagccgaatatcacaaaacacaacatgtatatcgctgataaggcaagaaaataa |
44836384 |
T |
|
| Q |
131 |
ccatatgtaatcaaccaatatggcccgtcaccaagaccatgcattttcatcatcattcttaatttttgctgcttctcataaaccagtgatgtcagaataa |
230 |
Q |
| |
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||||||||||||| |||||||||||| |||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||| || || |
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| T |
44836383 |
ccatatgtaatcatccaatatggcccatcaccaagaccatgcattttcatcatgattcttaatttttgttgcttctcataaaccagtgatgtcaaaacaa |
44836284 |
T |
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| Q |
231 |
cctacataaaatgca |
245 |
Q |
| |
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|||| |||||||||| |
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| T |
44836283 |
cctatataaaatgca |
44836269 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 52 - 309
Target Start/End: Complemental strand, 44897407 - 44897150
Alignment:
| Q |
52 |
aatggttatattcttacctaaggatgagccgaacatcacaaaacacaacatatagatcgctgataatgcaagaaaataaccatatgtaatcaaccaatat |
151 |
Q |
| |
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|||||||||||||||||||| | |||||| || |||||||| |||||||| |||||| ||||||| ||||| ||||||||||||||||||| ||||||| |
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| T |
44897407 |
aatggttatattcttacctaggactgagccaaatatcacaaagcacaacatgtagatcactgataaggcaaggaaataaccatatgtaatcatccaatat |
44897308 |
T |
|
| Q |
152 |
ggcccgtcaccaagaccatgcattttcatcatcattcttaatttttgctgcttctcataaaccagtgatgtcagaataacctacataaaatgcacataga |
251 |
Q |
| |
|
|| || |||||||||||||||||||||||||| ||||| |||||||| ||||||||||||| |||||||||||| | ||||||||| ||||| ||||| |
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| T |
44897307 |
ggtccatcaccaagaccatgcattttcatcatgattctcaatttttgttgcttctcataaatcagtgatgtcagcacaacctacattaaatgtgtataga |
44897208 |
T |
|
| Q |
252 |
gcttaattatgttgaacagataaatacacttgaacatatattctgttgtgtttgcatt |
309 |
Q |
| |
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||||| | || || || ||| ||||||||| ||||| |||| || ||||||||||| |
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| T |
44897207 |
gcttactcatattaaaaagaaaaatacactaaaacatctattatgcagtgtttgcatt |
44897150 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 284 - 373
Target Start/End: Complemental strand, 44836252 - 44836166
Alignment:
| Q |
284 |
aacatatattctgttgtgtttgcattattggatgtcagatacaattattgactttgaatacgtgtcatatattgttccatgagcagaaaa |
373 |
Q |
| |
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||||| ||||||||||||| ||||||| ||||| || ||| ||||||||||||||| | | || || ||||||||||||||||||||| |
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| T |
44836252 |
aacatctattctgttgtgtgtgcatta---gatgttaggtacgattattgactttgaagatgagtaatgtattgttccatgagcagaaaa |
44836166 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 92 - 237
Target Start/End: Original strand, 12927449 - 12927594
Alignment:
| Q |
92 |
aaacacaacatatagatcgctgataatgcaagaaaataaccatatgtaatcaaccaatatggcccgtcaccaagaccatgcattttcatcatcattctta |
191 |
Q |
| |
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||||||||||| ||||| ||||| ||||||||||||| || | ||| | |||||||||||| ||||| |||||||||||||||||||| ||||| | |
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| T |
12927449 |
aaacacaacatgtagataattgatatggcaagaaaataactgtaagaaataatccaatatggcccatcaccgagaccatgcattttcatcatgattctca |
12927548 |
T |
|
| Q |
192 |
atttttgctgcttctcataaaccagtgatgtcagaataacctacat |
237 |
Q |
| |
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| T |
12927549 |
aattttgttgcttctcgtaaactaatgatgtgaggacaacctacat |
12927594 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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