View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12665_high_8 (Length: 320)
Name: NF12665_high_8
Description: NF12665
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12665_high_8 |
 | |
|
| [»] chr1 (1 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 233; Significance: 1e-129; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 80 - 320
Target Start/End: Complemental strand, 8432247 - 8432007
Alignment:
| Q |
80 |
ttatttagctttaagcacaggattcaactgaagaggcctaggtggagccattgttcttctcttccaaagattaatttcattccttggcttaaacttcaaa |
179 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
8432247 |
ttatttagctttaagcacaggattcaactgaagaggcctaggtggagccattgttcttctcttccaaagattaatttcattccttggcttaaacttgaaa |
8432148 |
T |
|
| Q |
180 |
tcagatgtaccagtagtatttccaccaacacctaaaataggtgcagaaaatggaatcaaaatttcatcatcctctccatccgtaaaacattccctttgat |
279 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
8432147 |
tcagatgtaccagtagtatttccaccaacacctaaaataggtgcagaaaatggaatcaaaatttcatcatcctctccatcagtaaaacattccctttgat |
8432048 |
T |
|
| Q |
280 |
caatttcttcaggctcaatcactgccttccaatcaaattta |
320 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8432047 |
caatttcttcaggctcaatcactgccttccaatcaaattta |
8432007 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 98 - 160
Target Start/End: Complemental strand, 14438909 - 14438847
Alignment:
| Q |
98 |
aggattcaactgaagaggcctaggtggagccattgttcttctcttccaaagattaatttcatt |
160 |
Q |
| |
|
||||||||| | ||||||||||| ||| || || ||||||||||| ||||||||||||||||| |
|
|
| T |
14438909 |
aggattcaattaaagaggcctagatggtgctatagttcttctctttcaaagattaatttcatt |
14438847 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 111 - 157
Target Start/End: Complemental strand, 53579139 - 53579093
Alignment:
| Q |
111 |
agaggcctaggtggagccattgttcttctcttccaaagattaatttc |
157 |
Q |
| |
|
|||||||||||||||||||| || ||||||||||| ||||||||||| |
|
|
| T |
53579139 |
agaggcctaggtggagccatggtccttctcttccatagattaatttc |
53579093 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University