View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12665_low_11 (Length: 278)
Name: NF12665_low_11
Description: NF12665
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12665_low_11 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 251; Significance: 1e-139; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 8 - 278
Target Start/End: Complemental strand, 27794665 - 27794395
Alignment:
| Q |
8 |
caagaaccccaacacaaatcaaacagacataccatgtcggaatccggaaatctcggtgtagtagtagtagcagtagacggaagcgaagagagcatgaacg |
107 |
Q |
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| T |
27794665 |
caagaaccccaacccaaatcaaacagacatactatgtcggaatccggaaatctcggtgtagtagtagtagcagtagacggaagcgaagagagcatgaacg |
27794566 |
T |
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| Q |
108 |
ctctccgctgggcgttagaaaatctcaagctccgatcacctacacccgattccaccgacactggttctttcatcatcctccacgttcaatctcctccgtc |
207 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||| |
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| T |
27794565 |
ctctccgctgggcgttagaaaatctcaagctccgatcacctgcacccgattccaccgacgctggttctttcatcatcctccacgttcaatctccgccgtc |
27794466 |
T |
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| Q |
208 |
aatcgccaccggtcttaatcccggttccatccctttcggtggacccagttcagtacatcattttctttcac |
278 |
Q |
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| T |
27794465 |
aatcgccaccggtcttaatcccggttccatccctttcggtggacccagttcagtacatcattttctttcac |
27794395 |
T |
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