View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12665_low_12 (Length: 240)
Name: NF12665_low_12
Description: NF12665
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12665_low_12 |
 | |
|
| [»] chr8 (4 HSPs) |
| |
|
Alignment Details
Target: chr8 (Bit Score: 115; Significance: 2e-58; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 122 - 240
Target Start/End: Complemental strand, 38674182 - 38674064
Alignment:
| Q |
122 |
cagtgttaaggttatgtacaaccattttaatcatagatctgggaagaaagctccgttgattgctgatgatgtgtatgaaattatcatcaaggtagttagc |
221 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
38674182 |
cagtgttaaggttatgtacaaccattttaatcatagatctgggaagaaagctccgttgattgccgatgatgtgtatgaaattatcatcaaggtagttagc |
38674083 |
T |
|
| Q |
222 |
atgtccaattgtttgagat |
240 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
38674082 |
atgtccaattgtttgagat |
38674064 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 18 - 71
Target Start/End: Complemental strand, 38674280 - 38674227
Alignment:
| Q |
18 |
aaatccttttctgaaacgtgagtgggtgtttgcgttttgatgattttctgattg |
71 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38674280 |
aaatccttttctgaaacgtgagtgggtgtttgcgttttgatgattttctgattg |
38674227 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 122 - 233
Target Start/End: Complemental strand, 38669634 - 38669533
Alignment:
| Q |
122 |
cagtgttaaggttatgtacaaccattttaatcatagatctgggaagaaagctccgttgattgctgatgatgtgtatgaaattatcatcaaggtagttagc |
221 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||| |||||||||||||| ||||||||||||||||||||| ||||||| |||| |
|
|
| T |
38669634 |
cagtgttaaggttatgtacaaccatttt----------ctgggaagaatgctccgttgattgccaatgatgtgtatgaaattatcaccaaggtatttagg |
38669545 |
T |
|
| Q |
222 |
atgtccaattgt |
233 |
Q |
| |
|
|||||||||||| |
|
|
| T |
38669544 |
atgtccaattgt |
38669533 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 18 - 71
Target Start/End: Complemental strand, 38669724 - 38669671
Alignment:
| Q |
18 |
aaatccttttctgaaacgtgagtgggtgtttgcgttttgatgattttctgattg |
71 |
Q |
| |
|
||||| ||| |||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
38669724 |
aaatcgtttgctgaaacgtgagtgggtgtttgtgttttgatgattttctgattg |
38669671 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 171 - 208
Target Start/End: Complemental strand, 2061481 - 2061444
Alignment:
| Q |
171 |
gctccgttgattgctgatgatgtgtatgaaattatcat |
208 |
Q |
| |
|
|||||||||||||||||||||||||||| ||| ||||| |
|
|
| T |
2061481 |
gctccgttgattgctgatgatgtgtatgcaatcatcat |
2061444 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University