View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12665_low_16 (Length: 215)
Name: NF12665_low_16
Description: NF12665
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12665_low_16 |
 | |
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| [»] scaffold0013 (1 HSPs) |
| | |
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| [»] scaffold0014 (1 HSPs) |
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| [»] scaffold0164 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 150; Significance: 2e-79; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 18 - 199
Target Start/End: Complemental strand, 26132750 - 26132569
Alignment:
| Q |
18 |
cagagagttttgctatagtcatgttaccatttggtaacttgatatgaacaggtttaatagattgataggagtcaaaagctttaataaaggagcatatatg |
117 |
Q |
| |
|
|||||| |||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||| | ||||||||||| |
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|
| T |
26132750 |
cagagatttttgctatagttatgttaccatttggtaacttaatatgaacaggtttaatagattgataggaatcaaaagctttaatagatgagcatatatg |
26132651 |
T |
|
| Q |
118 |
gtcacttgcacctgaatcaactatccatgaaccaaaactgcagtgattcagagcatatgaaagtgtggatatacctgatgtc |
199 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26132650 |
atcacttgctcctgaatcaactatccatgaaccaaaactgcagtgattcagagcatatgaaagtgtggatatacctgatgtc |
26132569 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0013 (Bit Score: 146; Significance: 4e-77; HSPs: 1)
Name: scaffold0013
Description:
Target: scaffold0013; HSP #1
Raw Score: 146; E-Value: 4e-77
Query Start/End: Original strand, 18 - 199
Target Start/End: Original strand, 249737 - 249918
Alignment:
| Q |
18 |
cagagagttttgctatagtcatgttaccatttggtaacttgatatgaacaggtttaatagattgataggagtcaaaagctttaataaaggagcatatatg |
117 |
Q |
| |
|
|||||| |||||||||||| |||||||||||||||||||| ||||| ||||||||||||||||||||||| ||||||||||||||| | ||||||||||| |
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|
| T |
249737 |
cagagatttttgctatagttatgttaccatttggtaacttaatatggacaggtttaatagattgataggaatcaaaagctttaatagatgagcatatatg |
249836 |
T |
|
| Q |
118 |
gtcacttgcacctgaatcaactatccatgaaccaaaactgcagtgattcagagcatatgaaagtgtggatatacctgatgtc |
199 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
249837 |
atcacttgctcctgaatcaactatccatgaaccaaaactgcagtgattcagagcatatgaaagtgtggatatacctgatgtc |
249918 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 146; Significance: 4e-77; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 146; E-Value: 4e-77
Query Start/End: Original strand, 18 - 199
Target Start/End: Original strand, 31195976 - 31196157
Alignment:
| Q |
18 |
cagagagttttgctatagtcatgttaccatttggtaacttgatatgaacaggtttaatagattgataggagtcaaaagctttaataaaggagcatatatg |
117 |
Q |
| |
|
|||||| |||||||||||| |||||||||||||||||||| ||||| ||||||||||||||||||||||| ||||||||||||||| | ||||||||||| |
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|
| T |
31195976 |
cagagatttttgctatagttatgttaccatttggtaacttaatatggacaggtttaatagattgataggaatcaaaagctttaatagatgagcatatatg |
31196075 |
T |
|
| Q |
118 |
gtcacttgcacctgaatcaactatccatgaaccaaaactgcagtgattcagagcatatgaaagtgtggatatacctgatgtc |
199 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
31196076 |
atcacttgctcctgaatcaactatccatgaaccaaaactgcagtgattcagagcatatgaaagtgtggatatacctgatgtc |
31196157 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 146; E-Value: 4e-77
Query Start/End: Original strand, 18 - 199
Target Start/End: Complemental strand, 52772337 - 52772156
Alignment:
| Q |
18 |
cagagagttttgctatagtcatgttaccatttggtaacttgatatgaacaggtttaatagattgataggagtcaaaagctttaataaaggagcatatatg |
117 |
Q |
| |
|
|||||| |||||||||||| |||||||||||||||||||| ||||| ||||||||||||||||||||||| ||||||||||||||| | ||||||||||| |
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|
| T |
52772337 |
cagagatttttgctatagttatgttaccatttggtaacttaatatggacaggtttaatagattgataggaatcaaaagctttaatagatgagcatatatg |
52772238 |
T |
|
| Q |
118 |
gtcacttgcacctgaatcaactatccatgaaccaaaactgcagtgattcagagcatatgaaagtgtggatatacctgatgtc |
199 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
52772237 |
atcacttgctcctgaatcaactatccatgaaccaaaactgcagtgattcagagcatatgaaagtgtggatatacctgatgtc |
52772156 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 18 - 177
Target Start/End: Complemental strand, 53977427 - 53977268
Alignment:
| Q |
18 |
cagagagttttgctatagtcatgttaccatttggtaacttgatatgaacaggtttaatagattgataggagtcaaaagctttaataaaggagcatatatg |
117 |
Q |
| |
|
|||||| ||||||||||| ||| || |||||||| | ||||||||| |||||| |||||| ||| || |||||| ||| ||| |||| || || || |
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|
| T |
53977427 |
cagagaattttgctatagccatatttccatttggcagcttgatatgcacaggtataataggagcataagaatcaaaatttttgatagaggaacaaatgtg |
53977328 |
T |
|
| Q |
118 |
gtcacttgcacctgaatcaactatccatgaaccaaaactgcagtgattcagagcatatga |
177 |
Q |
| |
|
||||| |||||||||||||||||||| | |||||||| | ||||||| || |||||| |
|
|
| T |
53977327 |
atcactagcacctgaatcaactatccaagttccaaaacttgaatgattcatagtatatga |
53977268 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 143; Significance: 3e-75; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 25 - 199
Target Start/End: Complemental strand, 16255820 - 16255646
Alignment:
| Q |
25 |
ttttgctatagtcatgttaccatttggtaacttgatatgaacaggtttaatagattgataggagtcaaaagctttaataaaggagcatatatggtcactt |
124 |
Q |
| |
|
|||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||| | ||||||||||| |||||| |
|
|
| T |
16255820 |
ttttgctatagttatgttaccatttggtaacttaatatgaacaggtttaatagattgataggaatcaaaagctttaatagatgagcatatatgatcactt |
16255721 |
T |
|
| Q |
125 |
gcacctgaatcaactatccatgaaccaaaactgcagtgattcagagcatatgaaagtgtggatatacctgatgtc |
199 |
Q |
| |
|
|| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16255720 |
gctcatgaatcaactatccatgaaccaaaactgcagtgattcagagcatatgaaagtgtggatatacctgatgtc |
16255646 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0014 (Bit Score: 142; Significance: 1e-74; HSPs: 1)
Name: scaffold0014
Description:
Target: scaffold0014; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 18 - 199
Target Start/End: Original strand, 96620 - 96801
Alignment:
| Q |
18 |
cagagagttttgctatagtcatgttaccatttggtaacttgatatgaacaggtttaatagattgataggagtcaaaagctttaataaaggagcatatatg |
117 |
Q |
| |
|
|||||| |||| ||||||| |||||||||||||||||||| ||||| ||||||||||||||||||||||| ||||||||||||||| | ||||||||||| |
|
|
| T |
96620 |
cagagatttttactatagttatgttaccatttggtaacttaatatggacaggtttaatagattgataggaatcaaaagctttaatagatgagcatatatg |
96719 |
T |
|
| Q |
118 |
gtcacttgcacctgaatcaactatccatgaaccaaaactgcagtgattcagagcatatgaaagtgtggatatacctgatgtc |
199 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
96720 |
atcacttgctcctgaatcaactatccatgaaccaaaactgcagtgattcagagcatatgaaagtgtggatatacctgatgtc |
96801 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 142; Significance: 1e-74; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 18 - 199
Target Start/End: Complemental strand, 13987297 - 13987116
Alignment:
| Q |
18 |
cagagagttttgctatagtcatgttaccatttggtaacttgatatgaacaggtttaatagattgataggagtcaaaagctttaataaaggagcatatatg |
117 |
Q |
| |
|
|||||| |||| ||||||| |||||||||||||||||||| ||||| ||||||||||||||||||||||| ||||||||||||||| | ||||||||||| |
|
|
| T |
13987297 |
cagagatttttactatagttatgttaccatttggtaacttaatatggacaggtttaatagattgataggaatcaaaagctttaatagatgagcatatatg |
13987198 |
T |
|
| Q |
118 |
gtcacttgcacctgaatcaactatccatgaaccaaaactgcagtgattcagagcatatgaaagtgtggatatacctgatgtc |
199 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13987197 |
atcacttgctcctgaatcaactatccatgaaccaaaactgcagtgattcagagcatatgaaagtgtggatatacctgatgtc |
13987116 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 26 - 195
Target Start/End: Complemental strand, 18253279 - 18253110
Alignment:
| Q |
26 |
tttgctatagtcatgttaccatttggtaacttgatatgaacaggtttaatagattgataggagtcaaaagctttaataaaggagcatatatggtcacttg |
125 |
Q |
| |
|
|||||||||| ||| || |||||||||| |||||| || |||||| ||||||| ||| || |||||| ||| || |||| || ||||| ||||| | |
|
|
| T |
18253279 |
tttgctatagccatatttccatttggtagcttgatgtgcacaggtataatagaagcataagaatcaaaaattttgatggaggaacaaatatgatcactag |
18253180 |
T |
|
| Q |
126 |
cacctgaatcaactatccatgaaccaaaactgcagtgattcagagcatatgaaagtgtggatatacctga |
195 |
Q |
| |
|
|||| |||||||||||||| | |||||||| | ||||||| || |||||| ||| | | ||||||||| |
|
|
| T |
18253179 |
cacccgaatcaactatccaagttccaaaacttgaatgattcatagtatatgagagtctagttatacctga |
18253110 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0164 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: scaffold0164
Description:
Target: scaffold0164; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 26 - 177
Target Start/End: Original strand, 17573 - 17724
Alignment:
| Q |
26 |
tttgctatagtcatgttaccatttggtaacttgatatgaacaggtttaatagattgataggagtcaaaagctttaataaaggagcatatatggtcacttg |
125 |
Q |
| |
|
|||||||||| ||| || |||||||| ||||||||||| |||||| |||||| ||| || |||||| ||| ||| |||| || || || ||||| | |
|
|
| T |
17573 |
tttgctatagccatatttccatttggcaacttgatatgcacaggtataataggagcataagaatcaaaaaatttgatagaggaacaaatgtgatcactag |
17672 |
T |
|
| Q |
126 |
cacctgaatcaactatccatgaaccaaaactgcagtgattcagagcatatga |
177 |
Q |
| |
|
||||||||||||||||||| | |||||||| | ||||||| || |||||| |
|
|
| T |
17673 |
cacctgaatcaactatccaagttccaaaacttgaatgattcatagtatatga |
17724 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0164; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 18 - 177
Target Start/End: Original strand, 27945 - 28104
Alignment:
| Q |
18 |
cagagagttttgctatagtcatgttaccatttggtaacttgatatgaacaggtttaatagattgataggagtcaaaagctttaataaaggagcatatatg |
117 |
Q |
| |
|
|||||| ||||||||||| ||| || |||||||| | ||||||||| |||||| |||||| ||| || |||||| ||| ||| |||| || || || |
|
|
| T |
27945 |
cagagaattttgctatagccatatttccatttggcagcttgatatgcacaggtataataggagcataagaatcaaaatttttgatagaggaacaaatgtg |
28044 |
T |
|
| Q |
118 |
gtcacttgcacctgaatcaactatccatgaaccaaaactgcagtgattcagagcatatga |
177 |
Q |
| |
|
||||| |||||||||||||||||||| | |||||||| | ||||||| || |||||| |
|
|
| T |
28045 |
atcactagcacctgaatcaactatccaagttccaaaacttgaatgattcatagtatatga |
28104 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 26 - 177
Target Start/End: Complemental strand, 15192401 - 15192250
Alignment:
| Q |
26 |
tttgctatagtcatgttaccatttggtaacttgatatgaacaggtttaatagattgataggagtcaaaagctttaataaaggagcatatatggtcacttg |
125 |
Q |
| |
|
|||||||||| ||| || |||||||| ||||||||||| |||||| |||||| ||| || |||||| ||| ||| |||| || || || ||||| | |
|
|
| T |
15192401 |
tttgctatagccatatttccatttggcaacttgatatgcacaggtataataggagcataagaatcaaaaaatttgatagaggaacaaatgtgatcactag |
15192302 |
T |
|
| Q |
126 |
cacctgaatcaactatccatgaaccaaaactgcagtgattcagagcatatga |
177 |
Q |
| |
|
||||||||||||||||||| | |||||||| | ||||||| || |||||| |
|
|
| T |
15192301 |
cacctgaatcaactatccaagttccaaaacttgaatgattcatagtatatga |
15192250 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 18 - 177
Target Start/End: Original strand, 49641872 - 49642031
Alignment:
| Q |
18 |
cagagagttttgctatagtcatgttaccatttggtaacttgatatgaacaggtttaatagattgataggagtcaaaagctttaataaaggagcatatatg |
117 |
Q |
| |
|
|||||| ||||||||||| ||| || |||||||| | ||||||||| |||||| |||||| ||| || |||||| ||| ||| |||| || || || |
|
|
| T |
49641872 |
cagagaattttgctatagccatatttccatttggcagcttgatatgcacaggtataataggagcataagaatcaaaatttttgatagaggaacaaatgtg |
49641971 |
T |
|
| Q |
118 |
gtcacttgcacctgaatcaactatccatgaaccaaaactgcagtgattcagagcatatga |
177 |
Q |
| |
|
||||| |||||||||||||||||||| | |||||||| | ||||||| || |||||| |
|
|
| T |
49641972 |
atcactagcacctgaatcaactatccaagttccaaaacttgaatgattcatagtatatga |
49642031 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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