View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12665_low_3 (Length: 513)
Name: NF12665_low_3
Description: NF12665
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12665_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 450; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 450; E-Value: 0
Query Start/End: Original strand, 1 - 474
Target Start/End: Original strand, 1807712 - 1808185
Alignment:
| Q |
1 |
aaaatagcggttgttgcggtgctcccgatgatggtaatttggatggccaaattcaaaggagtgatgaaggtggaagaaagactaagatgaataaactaag |
100 |
Q |
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|||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
1807712 |
aaaatagcggttgttgcggtgctcccgaagatggtaatctggatggccaaattcaaagaagtgatgaaggtggaagaaagactaagatgaataaactaag |
1807811 |
T |
|
| Q |
101 |
aaagattattttttcacttccttctgcttttatagtctttgtattgggaatagttttggtttttataagaagaagtgaagtcgtgcatgaaattaaattt |
200 |
Q |
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| T |
1807812 |
aaagattattttttcacttccttctgcttttatagtctttgtattgggaatagttttggtttttataagaagaagtgaagttgtgcatgaaattaaattt |
1807911 |
T |
|
| Q |
201 |
ggaccctctaaaatagaagtaatgaaattcactaaacaaaattggaagaaaggttttattaaaggtgcaattccacaacttccattgtcaatgttgaact |
300 |
Q |
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| T |
1807912 |
ggaccctctaaaatagaagtaatgaaattcactaaagaaaattggaagaaaggttttattaaaggtgcaattccacaacttccattgtcaatgttgaact |
1808011 |
T |
|
| Q |
301 |
cagtgatagctgtttgtaaattatcaacagatcttttccctgaaagggaattttcagttacatcaatttcagtgacagttggactaatgaatttagttgg |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1808012 |
cagtgatagctgtttgtaaattatcaacagatcttttccctgaaagggaattttcagttacatcaatttcagtgacagttggactaatgaatttagttgg |
1808111 |
T |
|
| Q |
401 |
ttcatggtttggtgctgtgccaacttgtcatggtgctggaggactagcaggacagtataaatttggaggaagga |
474 |
Q |
| |
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| T |
1808112 |
ttcttggtttggtgctgtgccaacttgtcatggtgctggaggactagcaggacagtataaatttggaggaagga |
1808185 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 142; E-Value: 3e-74
Query Start/End: Original strand, 101 - 474
Target Start/End: Original strand, 1875416 - 1875789
Alignment:
| Q |
101 |
aaagattattttttcacttccttctgcttttatagtctttgtattgggaatagttttggtttttataagaagaagtgaagtcgtgcatgaaattaaattt |
200 |
Q |
| |
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||||||| ||||||||||||||||||||||| || ||||||| || || | |||||| || |||| ||| | | || |||||||||||||| ||| |
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| T |
1875416 |
aaagattcttttttcacttccttctgcttttgtaatctttgttttaggtgttattttggcattcataaaaaggcctaatgtggtgcatgaaattaagttt |
1875515 |
T |
|
| Q |
201 |
ggaccctctaaaatagaagtaatgaaattcactaaacaaaattggaagaaaggttttattaaaggtgcaattccacaacttccattgtcaatgttgaact |
300 |
Q |
| |
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| T |
1875516 |
ggaccctcttcaatagaagtggtgaaattcactaaacatgcttggaagaaaggttttatcaaaggtacaattcctcaacttcctttgacaatcttgaact |
1875615 |
T |
|
| Q |
301 |
cagtgatagctgtttgtaaattatcaacagatcttttccctgaaagggaattttcagttacatcaatttcagtgacagttggactaatgaatttagttgg |
400 |
Q |
| |
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| ||||||||||||||||| || |||| ||| | || ||||||| ||| |||||||| || ||| |||||||||||||||| | |||||||| ||||| |
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| T |
1875616 |
ctgtgatagctgtttgtaagttgtcaaaggatttgtttcctgaaaaggacttttcagtcacttcactttcagtgacagttgggttgatgaatttggttgg |
1875715 |
T |
|
| Q |
401 |
ttcatggtttggtgctgtgccaacttgtcatggtgctggaggactagcaggacagtataaatttggaggaagga |
474 |
Q |
| |
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|| ||||||||||| ||||| |||| ||||||||||| |||||||||||||||||||||||||| ||||||| |
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| T |
1875716 |
ttgttggtttggtgcaatgccatcttgccatggtgctggtggactagcaggacagtataaatttggtggaagga |
1875789 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 194; Significance: 1e-105; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 99 - 472
Target Start/End: Complemental strand, 25798402 - 25798029
Alignment:
| Q |
99 |
agaaagattattttttcacttccttctgcttttatagtctttgtattgggaatagttttggtttttataagaagaagtgaagtcgtgcatgaaattaaat |
198 |
Q |
| |
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||||||||||||||||||||||||||||| ||| |||||||||| ||||| || ||||||||||||||||||| | |||||| || |||||||||||| |
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| T |
25798402 |
agaaagattattttttcacttccttctgcatttgtagtctttgtgttggggattgttttggtttttataagaaaacatgaagttgtcaatgaaattaaat |
25798303 |
T |
|
| Q |
199 |
ttggaccctctaaaatagaagtaatgaaattcactaaacaaaattggaagaaaggttttattaaaggtgcaattccacaacttccattgtcaatgttgaa |
298 |
Q |
| |
|
||||||| || ||||||| | |||||||||||||||| ||||||||||||||| | |||||||||||||| ||||||||||||||||| ||||| |
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|
| T |
25798302 |
ttggaccaacttcaatagaattggtgaaattcactaaacatgcatggaagaaaggttttgtcaaaggtgcaattcctcaacttccattgtcaattttgaa |
25798203 |
T |
|
| Q |
299 |
ctcagtgatagctgtttgtaaattatcaacagatcttttccctgaaagggaattttcagttacatcaatttcagtgacagttggactaatgaatttagtt |
398 |
Q |
| |
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||| || |||||||||||||| ||||||||||||||||| || |||| ||||||||||||||| |||||||||||||||||||||||||||||||| | |
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| T |
25798202 |
ctctgtcatagctgtttgtaagttatcaacagatctttttccagaaaaggaattttcagttacttcaatttcagtgacagttggactaatgaatttgatc |
25798103 |
T |
|
| Q |
399 |
ggttcatggtttggtgctgtgccaacttgtcatggtgctggaggactagcaggacagtataaatttggaggaag |
472 |
Q |
| |
|
|||| ||||||||| ||||||||||||||||||||| || ||||| |||||||| ||||||||||| ||||| |
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|
| T |
25798102 |
ggttgttggtttggttgtgtgccaacttgtcatggtgccggtggactcgcaggacaatataaatttggtggaag |
25798029 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 101 - 466
Target Start/End: Complemental strand, 49993557 - 49993192
Alignment:
| Q |
101 |
aaagattattttttcacttccttctgcttttatagtctttgtattgggaatagttttggtttttataagaagaagtgaagtcgtgcatgaaattaaattt |
200 |
Q |
| |
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||||||| |||||||||| ||||||||||||||||| ||||| ||||| | |||||| |||||||||||| | | || | ||||||||||||||| |
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| T |
49993557 |
aaagattgttttttcactaccttctgcttttatagtatttgttttgggtgtgattttgggttttataagaaggcctaatgtgatacatgaaattaaattt |
49993458 |
T |
|
| Q |
201 |
ggaccctctaaaatagaagtaatgaaattcactaaacaaaattggaagaaaggttttattaaaggtgcaattccacaacttccattgtcaatgttgaact |
300 |
Q |
| |
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| T |
49993457 |
ggaccttctaatatagagttagtgaaattttctaaacatgcatggaaacaaggttttataaagggtactattccacaactacccttgtcaattttgaact |
49993358 |
T |
|
| Q |
301 |
cagtgatagctgtttgtaaattatcaacagatcttttccctgaaagggaattttcagttacatcaatttcagtgacagttggactaatgaatttagttgg |
400 |
Q |
| |
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| |||||||||||||| ||| |||| | ||| | || || | ||| |||||||| || ||| |||||||||||||||| |||||||| | | || |
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| T |
49993357 |
cggtgatagctgtttgcaaactatcctctgatttatttccaaccaaggacttttcagtaacttcactttcagtgacagttgggttaatgaatcttttggg |
49993258 |
T |
|
| Q |
401 |
ttcatggtttggtgctgtgccaacttgtcatggtgctggaggactagcaggacagtataaatttgg |
466 |
Q |
| |
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| |||||||||||| ||||| |||||||||||||||||| |||||||||||||||||||||| |
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|
| T |
49993257 |
tggttggtttggtgctatgccatgctgtcatggtgctggaggattagcaggacagtataaatttgg |
49993192 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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