View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12665_low_8 (Length: 345)
Name: NF12665_low_8
Description: NF12665
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12665_low_8 |
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Alignment Details
Target: chr3 (Bit Score: 278; Significance: 1e-155; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 18 - 330
Target Start/End: Original strand, 3568857 - 3569167
Alignment:
| Q |
18 |
aacatccaacatgacatggaacttgttggtaattcaggtaccgtcatgtctgaagatagtagcatgcttgcggttcaacctgattttttggcagatgata |
117 |
Q |
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| T |
3568857 |
aacatccaacatgacatggaacttgttggtaattcaggtaccgtcatgtctgaagatagtagcatgcttgcggttcaacctggttttttggcagatgata |
3568956 |
T |
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| Q |
118 |
tagttcattatagtaacacaggtccgcaaagtgaaattatagtttatcacaacaacccaaatattcaacgtgatatggaattgtggcatagaattcggga |
217 |
Q |
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| T |
3568957 |
tagttcataatagtaacacaggtccgcaaagtgaaattatagtttatcacaacaacccaaatattcaacgtgatatggaa--gtggcatagaattcggga |
3569054 |
T |
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| Q |
218 |
gtacgatcaaaaggcggtggaagatctattcacactggttttgtccaagaagcaaaaacagaaattacgacaacgacaagtccttaggaaaccgccgtat |
317 |
Q |
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| T |
3569055 |
gtacgatcaaaaggcagtggaagatctattcacgctggttttgtccaagaagcaaaaacagaaattacgacaacaagaagtccttaggaaaccgccgtat |
3569154 |
T |
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| Q |
318 |
agaacccgctcag |
330 |
Q |
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| T |
3569155 |
agaacccgctcag |
3569167 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 108; Significance: 3e-54; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 142 - 329
Target Start/End: Complemental strand, 34215684 - 34215497
Alignment:
| Q |
142 |
cgcaaagtgaaattatagtttatcacaacaacccaaatattcaacgtgatatggaattgtggcatagaattcgggagtacgatcaaaaggcggtggaaga |
241 |
Q |
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| T |
34215684 |
cgcaaagtgaaattttagttcattacagtgacccaaatattcaacgtgatatggaattatggaatcgaattcgggagtacgatcaaaaggcagcggaaga |
34215585 |
T |
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| Q |
242 |
tctattcacactggttttgtccaagaagcaaaaacagaaattacgacaacgacaagtccttaggaaaccgccgtatagaacccgctca |
329 |
Q |
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| T |
34215584 |
tccattcacaccggttttgtccaagaagcaaaaactgaaattcagacaacaacatgtccttgggaaaccgccgtatagaacctgctca |
34215497 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 99; Significance: 8e-49; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 99; E-Value: 8e-49
Query Start/End: Original strand, 145 - 325
Target Start/End: Original strand, 11213059 - 11213236
Alignment:
| Q |
145 |
aaagtgaaattatagtttatcacaacaacccaaatattcaacgtgatatggaattgtggcatagaattcgggagtacgatcaaaaggcggtggaagatct |
244 |
Q |
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| T |
11213059 |
aaagtgaaattttagttcatcagagcaacccaaatattcaacgtgatatggaattgtggaatagaattcgggagtacgatcaaaaggcagcgggagatcc |
11213158 |
T |
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| Q |
245 |
attcacactggttttgtccaagaagcaaaaacagaaattacgacaacgacaagtccttaggaaaccgccgtatagaacccg |
325 |
Q |
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| T |
11213159 |
aatcacaccggttttatccaagaagcaaaaacagaaattgcgacaacg---tgtccttgggaaactgcggtatagaacccg |
11213236 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 165 - 329
Target Start/End: Original strand, 35222531 - 35222695
Alignment:
| Q |
165 |
cacaacaacccaaatattcaacgtgatatggaattgtggcatagaattcgggagtacgatcaaaaggcggtggaagatctattcacactggttttgtcca |
264 |
Q |
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| T |
35222531 |
cacagcaacccaaatatttgacatgatatggaattgtgaaatagaattcgagagtacgatcaaaagggaaaggaagatccatttactcttgttttgtcca |
35222630 |
T |
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| Q |
265 |
agaagcaaaaacagaaattacgacaacgacaagtccttaggaaaccgccgtatagaacccgctca |
329 |
Q |
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| T |
35222631 |
agaagcaaaaacagaaattgcggcaacaacaaattcttgggaagccgccatattgaacccgctca |
35222695 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 56; Significance: 4e-23; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 254 - 329
Target Start/End: Original strand, 17368047 - 17368122
Alignment:
| Q |
254 |
ggttttgtccaagaagcaaaaacagaaattacgacaacgacaagtccttaggaaaccgccgtatagaacccgctca |
329 |
Q |
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| T |
17368047 |
ggttttgtccaagaagcaaaaacagaaattgcgacaacaacatgtccttgggaaaccgccgtataaaacccgctca |
17368122 |
T |
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