View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12665_low_9 (Length: 325)
Name: NF12665_low_9
Description: NF12665
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12665_low_9 |
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Alignment Details
Target: chr8 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 92 - 323
Target Start/End: Complemental strand, 38673986 - 38673755
Alignment:
| Q |
92 |
gaatgcggcccgattggatagtgagataatctatgatagggattttgactatgattactttgggttcaaaaccctagagaggtcttatctgttgaaggtt |
191 |
Q |
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| T |
38673986 |
gaatgcggcccgattggatagtgagataatctatgatagggattttgactacgattactttgggttcaaaaccctagagaggtcttatctgttgaaggtt |
38673887 |
T |
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| Q |
192 |
caaggagtggttgtggaaagacctcaacatatgataatgagggtttctgttggaattcacaaggatgatgttgaatctgctgtcaaaacttatcatttca |
291 |
Q |
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| T |
38673886 |
caaggagtggttgtggaaagacctcaacatatgataatgagggtttctgttggaattcacaaggatgatgttgaatctgctgtcaaaacttatcatttca |
38673787 |
T |
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| Q |
292 |
tgtctcagagatggtttacctatgcttctcca |
323 |
Q |
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| T |
38673786 |
tgtctcagagatggtttacccatgcttctcca |
38673755 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 191; Significance: 1e-104; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 92 - 322
Target Start/End: Complemental strand, 2061440 - 2061210
Alignment:
| Q |
92 |
gaatgcggcccgattggatagtgagataatctatgatagggattttgactatgattactttgggttcaaaaccctagagaggtcttatctgttgaaggtt |
191 |
Q |
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||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||| ||||||||||||||||| ||| |
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| T |
2061440 |
gaatgcggctcgattggatagtgagataatctatgatagggattttgactacgattactttggattcaaaaccctagaaaggtcttatctgttgaaagtt |
2061341 |
T |
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| Q |
192 |
caaggagtggttgtggaaagacctcaacatatgataatgagggtttctgttggaattcacaaggatgatgttgaatctgctgtcaaaacttatcatttca |
291 |
Q |
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| T |
2061340 |
gaaggagtggttgtggaaagacctcaacatatgataatgagggtttctgttggaattcacaaagatgatgttgaatctgctgtcaaaacttatcatttca |
2061241 |
T |
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| Q |
292 |
tgtctcagagatggtttacctatgcttctcc |
322 |
Q |
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| T |
2061240 |
tgtctcagagatggttcactcatgcttctcc |
2061210 |
T |
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