View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12666_low_1 (Length: 394)
Name: NF12666_low_1
Description: NF12666
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12666_low_1 |
 | |
|
| [»] scaffold0068 (1 HSPs) |
| | |
|
| [»] scaffold0006 (1 HSPs) |
| | |
|
| [»] scaffold0530 (1 HSPs) |
| | |
|
Alignment Details
Target: chr6 (Bit Score: 318; Significance: 1e-179; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 18 - 379
Target Start/End: Original strand, 32094797 - 32095153
Alignment:
| Q |
18 |
atgtatatcagatacacagtctgcgtttgtgccgggacgttctatcttggatgatgcaatataatgacaccaatagaaattatccatcatatgaagtcta |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
32094797 |
atgtatatcagatacacagtctgcgtttgtaccgggacgttctatcttggataatgcaat-----gacaccaatagaaattatccatcatatgaagtcta |
32094891 |
T |
|
| Q |
118 |
aggttaaaggaaaattgggagaagtggctcttaaacttgatatcagtaaagcttacgaaagaattgagtggaactaccttcgagaaatcatggaaaaatg |
217 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32094892 |
aggttaaaggaaaattgagagaagtggctcttaaactttatatcagtaaagcttacgaaagaattgagtggaactaccttcgagaaatcatggaaaaatg |
32094991 |
T |
|
| Q |
218 |
ggattttctccacaatggattatgttatgtgtcgaaactgtcgactattctgttcttgtcaatggtaatgttacgggacccatcattccaggtagaggtt |
317 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
32094992 |
ggattttctccacaatggattatgttatgtgtcgaaactgtcgactattctgttcttgtcaatggtaatgttacgggacccatcattttaggtagaggtt |
32095091 |
T |
|
| Q |
318 |
tgaggcaaggtgaccctctgtcaccatatttgttcattatttgtgcagaagggttatccgca |
379 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32095092 |
tgaggcaaggtgaccctctgtcaccatatttgttcattatttgtgcagaagggttatccgca |
32095153 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 323 - 369
Target Start/End: Original strand, 15948724 - 15948770
Alignment:
| Q |
323 |
caaggtgaccctctgtcaccatatttgttcattatttgtgcagaagg |
369 |
Q |
| |
|
|||||||||||| |||||||||||||||| ||| ||||||| ||||| |
|
|
| T |
15948724 |
caaggtgaccctttgtcaccatatttgtttattctttgtgctgaagg |
15948770 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 104; Significance: 1e-51; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 133 - 375
Target Start/End: Complemental strand, 46390184 - 46389941
Alignment:
| Q |
133 |
tgggagaagtggctcttaaacttgatatcagtaaagcttacgaaagaattgagtggaactaccttcgagaaatcatgga-aaaatgggattttctccaca |
231 |
Q |
| |
|
||||||||||||||||||| |||||||| ||||||||||| || || || || ||||| || |||||||| | ||||| |||||||| ||||||| ||| |
|
|
| T |
46390184 |
tgggagaagtggctcttaagcttgatattagtaaagcttatgacaggatcgaatggaattatcttcgagaggttatggataaaatgggcttttctcaaca |
46390085 |
T |
|
| Q |
232 |
atggattatgttatgtgtcgaaactgtcgactattctgttcttgtcaatggtaatgttacgggacccatcattccaggtagaggtttgaggcaaggtgac |
331 |
Q |
| |
|
|||||| ||| | |||||||||||||||||||||||| |||||||||||||||| || |||||||| |||||||| |||||||| |||||||||||||| |
|
|
| T |
46390084 |
atggataatggtgtgtgtcgaaactgtcgactattctattcttgtcaatggtaacgtcacgggacctatcattcctggtagaggcttgaggcaaggtgat |
46389985 |
T |
|
| Q |
332 |
cctctgtcaccatatttgttcattatttgtgcagaagggttatc |
375 |
Q |
| |
|
|| | ||||| | ||||| ||||| |||||||||||| |||| |
|
|
| T |
46389984 |
ccattatcaccgcacttgtttattatatgtgcagaagggctatc |
46389941 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 133 - 375
Target Start/End: Original strand, 48211263 - 48211515
Alignment:
| Q |
133 |
tgggagaagtggctcttaaacttgatatcagtaaagcttacgaaagaattgagtggaactaccttcgagaaatcatgga-aaaatgggattttctccaca |
231 |
Q |
| |
|
||||||||||||||||||| |||||||| ||||||||||| || || || || ||||| || |||||| | | ||||| |||||||| |||||| ||| |
|
|
| T |
48211263 |
tgggagaagtggctcttaagcttgatattagtaaagcttatgacaggatcgaatggaattatcttcgacaggttatggataaaatgggcttttctgaaca |
48211362 |
T |
|
| Q |
232 |
atggatta---------tgttatgtgtcgaaactgtcgactattctgttcttgtcaatggtaatgttacgggacccatcattccaggtagaggtttgagg |
322 |
Q |
| |
|
|||||| | ||| |||||||||||||| ||||||| ||||||||||||||||||||| |||||||| |||||||| |||||||| |||||| |
|
|
| T |
48211363 |
atggataaagtggataatgtcgtgtgtcgaaactgttgactattttgttcttgtcaatggtaatgtcacgggacctatcattcctggtagaggcttgagg |
48211462 |
T |
|
| Q |
323 |
caaggtgaccctctgtcaccatatttgttcattatttgtgcagaagggttatc |
375 |
Q |
| |
|
|||||||| || | ||||| || ||||| ||||| |||||||||||| |||| |
|
|
| T |
48211463 |
caaggtgatccattatcaccgtacttgtttattatctgtgcagaagggctatc |
48211515 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0068 (Bit Score: 85; Significance: 2e-40; HSPs: 1)
Name: scaffold0068
Description:
Target: scaffold0068; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 133 - 375
Target Start/End: Complemental strand, 11806 - 11554
Alignment:
| Q |
133 |
tgggagaagtggctcttaaacttgatatcagtaaagcttacgaaagaattgagtggaactaccttcgagaaatcatgga-aaaatgggattttctccaca |
231 |
Q |
| |
|
||||||||||||||||||| |||||||| ||||||||||| || || || || ||||| || |||||| | | ||||| |||||||| |||||| ||| |
|
|
| T |
11806 |
tgggagaagtggctcttaagcttgatattagtaaagcttatgacaggatcgaatggaattatcttcgacaggttatggataaaatgggcttttctgaaca |
11707 |
T |
|
| Q |
232 |
atggatta---------tgttatgtgtcgaaactgtcgactattctgttcttgtcaatggtaatgttacgggacccatcattccaggtagaggtttgagg |
322 |
Q |
| |
|
|||||| | |||| |||||||||||||| ||||||| |||||||||||||||||| || |||||||| |||||||| |||||||| |||||| |
|
|
| T |
11706 |
atggataaagtggataatgttgtgtgtcgaaactgttgactattatgttcttgtcaatggtaacgtcacgggacctatcattcctggtagaggcttgagg |
11607 |
T |
|
| Q |
323 |
caaggtgaccctctgtcaccatatttgttcattatttgtgcagaagggttatc |
375 |
Q |
| |
|
|||||||| || ||||||| || ||||| |||||||||||||||||| |||| |
|
|
| T |
11606 |
caaggtgatccattgtcaccgtacttgtttattatttgtgcagaagggctatc |
11554 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 85; Significance: 2e-40; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 133 - 375
Target Start/End: Original strand, 21702104 - 21702356
Alignment:
| Q |
133 |
tgggagaagtggctcttaaacttgatatcagtaaagcttacgaaagaattgagtggaactaccttcgagaaatcatgga-aaaatgggattttctccaca |
231 |
Q |
| |
|
||||||||||||||||||| |||||||| ||||||||||| || || || || ||||| || |||||| | | ||||| |||||||| |||||| ||| |
|
|
| T |
21702104 |
tgggagaagtggctcttaagcttgatattagtaaagcttatgacaggatcgaatggaattatcttcgacaggttatggataaaatgggcttttctgaaca |
21702203 |
T |
|
| Q |
232 |
atggatta---------tgttatgtgtcgaaactgtcgactattctgttcttgtcaatggtaatgttacgggacccatcattccaggtagaggtttgagg |
322 |
Q |
| |
|
|||||| | |||| |||||||||||||| ||||||| |||||||||||||||||| || |||||||| |||||||| |||||||| |||||| |
|
|
| T |
21702204 |
atggataaagtggataatgttgtgtgtcgaaactgttgactattatgttcttgtcaatggtaacgtcacgggacctatcattcctggtagaggcttgagg |
21702303 |
T |
|
| Q |
323 |
caaggtgaccctctgtcaccatatttgttcattatttgtgcagaagggttatc |
375 |
Q |
| |
|
|||||||| || ||||||| || ||||| |||||||||||||||||| |||| |
|
|
| T |
21702304 |
caaggtgatccattgtcaccgtacttgtttattatttgtgcagaagggctatc |
21702356 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 68; Significance: 3e-30; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 232 - 375
Target Start/End: Complemental strand, 23266551 - 23266409
Alignment:
| Q |
232 |
atggattatgttatgtgtcgaaactgtcgactattctgttcttgtcaatggtaatgttacgggacccatcattccaggtagaggtttgaggcaaggtgac |
331 |
Q |
| |
|
|||||||||||| ||||| ||||| || ||||||| |||||||||||||||||||||||| || || || ||||| | ||||| || ||||||||||| |
|
|
| T |
23266551 |
atggattatgttgtgtgtggaaaccgttgactattttgttcttgtcaatggtaatgttactggtcctattattcctgc-agaggcttacggcaaggtgac |
23266453 |
T |
|
| Q |
332 |
cctctgtcaccatatttgttcattatttgtgcagaagggttatc |
375 |
Q |
| |
|
||| ||||||| |||||||| ||||||||||||||||||||||| |
|
|
| T |
23266452 |
cctttgtcaccgtatttgtttattatttgtgcagaagggttatc |
23266409 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 90 - 199
Target Start/End: Complemental strand, 23266702 - 23266593
Alignment:
| Q |
90 |
atagaaattatccatcatatgaagtctaaggttaaaggaaaattgggagaagtggctcttaaacttgatatcagtaaagcttacgaaagaattgagtgga |
189 |
Q |
| |
|
|||||||| || |||||||||||||| || || || | || | |||||||||||||| ||||||||||| || ||||| || || | ||||||||||| |
|
|
| T |
23266702 |
atagaaataatacatcatatgaagtcgaaagtcaaggataacgttggagaagtggctctgaaacttgatattagcaaagcatatgacaaaattgagtgga |
23266603 |
T |
|
| Q |
190 |
actaccttcg |
199 |
Q |
| |
|
|||| ||||| |
|
|
| T |
23266602 |
actatcttcg |
23266593 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0006 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: scaffold0006
Description:
Target: scaffold0006; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 231 - 374
Target Start/End: Complemental strand, 205361 - 205218
Alignment:
| Q |
231 |
aatggattatgttatgtgtcgaaactgtcgactattctgttcttgtcaatggtaatgttacgggacccatcattccaggtagaggtttgaggcaaggtga |
330 |
Q |
| |
|
|||||||| || | ||||| ||||| || ||||||||| | || ||||||||||||||||| ||||| || ||||| |||||||| |||||||| || || |
|
|
| T |
205361 |
aatggattgtgctgtgtgttgaaaccgttgactattctatactagtcaatggtaatgttactggacctattattcctggtagaggcttgaggcagggaga |
205262 |
T |
|
| Q |
331 |
ccctctgtcaccatatttgttcattatttgtgcagaagggttat |
374 |
Q |
| |
|
||| | ||||||||| | || ||||||||||||||||| |||| |
|
|
| T |
205261 |
ccccttatcaccatatctttttattatttgtgcagaaggtttat |
205218 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 51; Significance: 4e-20; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 249 - 375
Target Start/End: Original strand, 33347860 - 33347986
Alignment:
| Q |
249 |
tcgaaactgtcgactattctgttcttgtcaatggtaatgttacgggacccatcattccaggtagaggtttgaggcaaggtgaccctctgtcaccatattt |
348 |
Q |
| |
|
|||||||||| || ||||||||||||||||| |||||| || | || || || || ||||||||||| ||||| |||||||||||||| ||||| ||| | |
|
|
| T |
33347860 |
tcgaaactgttgattattctgttcttgtcaacggtaatattgctggtccgattataccaggtagagggttgagacaaggtgaccctctttcaccttatct |
33347959 |
T |
|
| Q |
349 |
gttcattatttgtgcagaagggttatc |
375 |
Q |
| |
|
|| || || ||||||||||||||||| |
|
|
| T |
33347960 |
ctttatcatatgtgcagaagggttatc |
33347986 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 47; Significance: 1e-17; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 231 - 369
Target Start/End: Original strand, 22907932 - 22908070
Alignment:
| Q |
231 |
aatggattatgttatgtgtcgaaactgtcgactattctgttcttgtcaatggtaatgttacgggacccatcattccaggtagaggtttgaggcaaggtga |
330 |
Q |
| |
|
||||||||||| | ||||| ||||| || || || | ||| |||||||||||||||| ||| | || ||||||||||| |||||||| || ||||| || |
|
|
| T |
22907932 |
aatggattatgatgtgtgttgaaacagtggattactatgtgcttgtcaatggtaatgctacaagtccaatcattccaggaagaggtttaagacaaggaga |
22908031 |
T |
|
| Q |
331 |
ccctctgtcaccatatttgttcattatttgtgcagaagg |
369 |
Q |
| |
|
||| || || ||||||||||| ||||||||||| ||||| |
|
|
| T |
22908032 |
cccactatccccatatttgtttattatttgtgctgaagg |
22908070 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 331 - 372
Target Start/End: Complemental strand, 12352839 - 12352798
Alignment:
| Q |
331 |
ccctctgtcaccatatttgttcattatttgtgcagaagggtt |
372 |
Q |
| |
|
|||||||||||||||||||| |||||||||||| |||||||| |
|
|
| T |
12352839 |
ccctctgtcaccatatttgtacattatttgtgctgaagggtt |
12352798 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 302 - 378
Target Start/End: Original strand, 21502955 - 21503031
Alignment:
| Q |
302 |
attccaggtagaggtttgaggcaaggtgaccctctgtcaccatatttgttcattatttgtgcagaagggttatccgc |
378 |
Q |
| |
|
||||| |||||||| |||||||| || |||||| | ||||| ||| | || ||||||||||||||||| |||||||| |
|
|
| T |
21502955 |
attcctggtagaggcttgaggcagggagaccctttatcaccgtatctttttattatttgtgcagaaggtttatccgc |
21503031 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 323 - 378
Target Start/End: Complemental strand, 3207214 - 3207159
Alignment:
| Q |
323 |
caaggtgaccctctgtcaccatatttgttcattatttgtgcagaagggttatccgc |
378 |
Q |
| |
|
||||| |||||||| || ||||| ||||| ||||||||||||||||| |||||||| |
|
|
| T |
3207214 |
caaggggaccctctttctccatacttgtttattatttgtgcagaaggtttatccgc |
3207159 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 309 - 342
Target Start/End: Complemental strand, 34233064 - 34233031
Alignment:
| Q |
309 |
gtagaggtttgaggcaaggtgaccctctgtcacc |
342 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||| |
|
|
| T |
34233064 |
gtaggggtttgaggcaaggtgaccctctgtcacc |
34233031 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 249 - 375
Target Start/End: Complemental strand, 26383522 - 26383396
Alignment:
| Q |
249 |
tcgaaactgtcgactattctgttcttgtcaatggtaatgttacgggacccatcattccaggtagaggtttgaggcaaggtgaccctctgtcaccatattt |
348 |
Q |
| |
|
|||||||||| || ||||||||||||||||||| |||| || | || || || || ||||||||||| ||||| ||| |||||||||| ||||| ||| | |
|
|
| T |
26383522 |
tcgaaactgttgattattctgttcttgtcaatgataatattgctggtccgattataccaggtagagggttgagacaatgtgaccctctttcaccttatct |
26383423 |
T |
|
| Q |
349 |
gttcattatttgtgcagaagggttatc |
375 |
Q |
| |
|
|| || || |||||| || ||||||| |
|
|
| T |
26383422 |
ctttatcatatgtgcataaaggttatc |
26383396 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0530 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0530
Description:
Target: scaffold0530; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 323 - 369
Target Start/End: Original strand, 9733 - 9779
Alignment:
| Q |
323 |
caaggtgaccctctgtcaccatatttgttcattatttgtgcagaagg |
369 |
Q |
| |
|
|||||||||||| |||||||||||||||| ||| ||||||| ||||| |
|
|
| T |
9733 |
caaggtgaccctttgtcaccatatttgtttattctttgtgctgaagg |
9779 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 302 - 375
Target Start/End: Original strand, 44493034 - 44493107
Alignment:
| Q |
302 |
attccaggtagaggtttgaggcaaggtgaccctctgtcaccatatttgttcattatttgtgcagaagggttatc |
375 |
Q |
| |
|
|||||||| ||||| |||| ||||| ||||| || || |||||||||||||||||||| || ||||| ||||| |
|
|
| T |
44493034 |
attccagggcgaggtctgagacaaggggacccgctttccccatatttgttcattatttgcgcggaaggtttatc |
44493107 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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