View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12666_low_2 (Length: 262)
Name: NF12666_low_2
Description: NF12666
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12666_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 192; Significance: 1e-104; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 19 - 247
Target Start/End: Complemental strand, 27714513 - 27714285
Alignment:
| Q |
19 |
tcctcaaggcctcttttccttgttatgttttttaccttcaaggtaatcaaaaccttaagataccacctaaacgaaaaccctaaaaaacgcaaacttcccc |
118 |
Q |
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| T |
27714513 |
tcctctaggcctcttttccttgttatgttttttaccttcagggtaatcaaaaccttaagataccaccttaacgaaaaccctaaaaaacgcaaacttcccc |
27714414 |
T |
|
| Q |
119 |
caggtcccaaaccatggcctatagttggcaatcttcctgaaatgcttgcaaacaagcctacaactacgtggatacacaaaataatggaagnnnnnnncac |
218 |
Q |
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| T |
27714413 |
caggtcccaaaccatggcctatagttggcaatcttcctgaaatgcttgcaaacaagcctacaactaggtggatacacaaaataatggaagaaaaaaacac |
27714314 |
T |
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| Q |
219 |
agaaatagcatgtatccgcctaggaaatg |
247 |
Q |
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| T |
27714313 |
agaaatagcatgtatccgcctaggaaatg |
27714285 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 30 - 247
Target Start/End: Complemental strand, 27747339 - 27747122
Alignment:
| Q |
30 |
tcttttccttgttatgttttttaccttcaaggtaatcaaaaccttaagataccacctaaacgaaaaccctaaaaaacgcaaacttcccccaggtcccaaa |
129 |
Q |
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| T |
27747339 |
tcttctccttattatattttttagttttatggtaatcaaaaccataagataccacttagttgagaaccctaaaaaagccaaacttccacccggtcccaaa |
27747240 |
T |
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| Q |
130 |
ccatggcctatagttggcaatcttcctgaaatgcttgcaaacaagcctacaactacgtggatacacaaaataatggaagnnnnnnncacagaaatagcat |
229 |
Q |
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| T |
27747239 |
ccatggcctatcgttggtaatattcctgaaatgcttgcaaataaacctgctactaggtggatacacaagataatggaagaattgaacactgaagtagcgt |
27747140 |
T |
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| Q |
230 |
gtatccgcctaggaaatg |
247 |
Q |
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|||||||||||||||||| |
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| T |
27747139 |
gtatccgcctaggaaatg |
27747122 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 109 - 247
Target Start/End: Original strand, 27697690 - 27697828
Alignment:
| Q |
109 |
aaacttcccccaggtcccaaaccatggcctatagttggcaatcttcctgaaatgcttgcaaacaagcctacaactacgtggatacacaaaataatggaag |
208 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||| |||||| ||||||||||| | |||||||| |
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| T |
27697690 |
aaacttcccccaggtcccaaaccatggcctatagttggtaatcttcctgaaatgcttgcaaacaaacctgcaactagttggatacacaagaaaatggaag |
27697789 |
T |
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| Q |
209 |
nnnnnnncacagaaatagcatgtatccgcctaggaaatg |
247 |
Q |
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| T |
27697790 |
aattgaacactgaaatagcatgtattcgtctaggaaatg |
27697828 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 62 - 247
Target Start/End: Complemental strand, 27727705 - 27727522
Alignment:
| Q |
62 |
taatcaaaaccttaagataccacctaaacgaaaaccctaaaaaacgcaaacttcccccaggtcccaaaccatggcctatagttggcaatcttcctgaaat |
161 |
Q |
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|||||||| || ||||||||||| ||| | |||||||| |||| |||||||| |||||||||||||||||||||||| |||| || |||||||||| |
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| T |
27727705 |
taatcaaatccataagataccacttaattaagaaccctaacaaaccaaaacttccaccaggtcccaaaccatggcctatacttggtaacattcctgaaat |
27727606 |
T |
|
| Q |
162 |
gcttgcaaacaagcctacaactacgtggatacacaaaataatggaagnnnnnnncacagaaatagcatgtatccgcctaggaaatg |
247 |
Q |
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| T |
27727605 |
gcttgcaaacaaacctgcaactaggtggat--acaaaatgatggaagaaatgaacaccgaaatagcgtgtatccgcctaggaaatg |
27727522 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 115 - 247
Target Start/End: Original strand, 26408685 - 26408817
Alignment:
| Q |
115 |
cccccaggtcccaaaccatggcctatagttggcaatcttcctgaaatgcttgcaaacaagcctacaactacgtggatacacaaaataatggaagnnnnnn |
214 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||| ||||||| || ||| || ||| ||||||| |||| | ||||||| |
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| T |
26408685 |
cccccaggtcccaaaccatggcctatagttggtaatcttcctgaaatgattgcaaataatcctgcacctatgtggatattcaaagtgatggaagatttga |
26408784 |
T |
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| Q |
215 |
ncacagaaatagcatgtatccgcctaggaaatg |
247 |
Q |
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||| ||||||||||||||||| |||||||||| |
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| T |
26408785 |
acaccgaaatagcatgtatccgtctaggaaatg |
26408817 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.00000009; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 133 - 170
Target Start/End: Complemental strand, 32347607 - 32347570
Alignment:
| Q |
133 |
tggcctatagttggcaatcttcctgaaatgcttgcaaa |
170 |
Q |
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| T |
32347607 |
tggcctatagtaggcaaccttcctgaaatgcttgcaaa |
32347570 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 133 - 170
Target Start/End: Complemental strand, 32364269 - 32364232
Alignment:
| Q |
133 |
tggcctatagttggcaatcttcctgaaatgcttgcaaa |
170 |
Q |
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||||||||||| ||||| |||||||||||||||||||| |
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| T |
32364269 |
tggcctatagtaggcaaccttcctgaaatgcttgcaaa |
32364232 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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