View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12667_high_1 (Length: 413)
Name: NF12667_high_1
Description: NF12667
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12667_high_1 |
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Alignment Details
Target: chr7 (Bit Score: 366; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 366; E-Value: 0
Query Start/End: Original strand, 17 - 405
Target Start/End: Complemental strand, 38622173 - 38621784
Alignment:
| Q |
17 |
aaaaccataattcaacatattcatatatgcatataaaataagactgataagaaaacacgaccctaaatcaacctcagaaaattttaaaactcaacatatg |
116 |
Q |
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| T |
38622173 |
aaaaccataattcaacatattcatatatgcatataaaataagactgataagaaaacacgaccctaaatcatcctcagaaaattttaaaactcaacatatg |
38622074 |
T |
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| Q |
117 |
atgacataagttcttggaaaaggacatcatagtgatgtaaagctcaaactataatggagttcatagaatggccaaaccaattgtgattatgaatctatta |
216 |
Q |
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| T |
38622073 |
atgacataagttcttggaaaaggacatcatagtgatgtaaagctcaaactataatggagttcatagaatggccaaaccaattgtgattatgaatctatta |
38621974 |
T |
|
| Q |
217 |
taggcaaaggct-aattccatgactgaaacccatgacctaatgacatgactatataactctaaccattgcactggcaccaagatccccttcctggaagaa |
315 |
Q |
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| T |
38621973 |
taggcaaaggctaaattccatgactgaaacccatgacctaatgacatgactatataactctaaccattgcactggaaccgagatccccttcctggaagag |
38621874 |
T |
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| Q |
316 |
aacagcctaattgctaaaagacataacttcttaaaacccttaaaattaaaacactacaagtaaacaacccaactactaaatatctgtgct |
405 |
Q |
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| T |
38621873 |
aacagcctaattgctaaaagacataacttcttaaaacccttaaaattaaaacactacaagtaaacaacccaactactaaatatctgtgct |
38621784 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 34 - 320
Target Start/End: Complemental strand, 38623497 - 38623218
Alignment:
| Q |
34 |
tattcatatatgcatataaaataagactgataagaaaacacgaccctaaatcaacctcagaaaattttaaaactcaacatatgatgacataagttcttgg |
133 |
Q |
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|||| ||||||||||||||||||||| ||||||||| || |||| | ||||| |||||||||||| | ||||| | |||| | | ||||||||| ||| |
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| T |
38623497 |
tattgatatatgcatataaaataagatagataagaaagcatgaccttgaatcatcctcagaaaattaaacaactcta-atataaaggcataagttcatgg |
38623399 |
T |
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| Q |
134 |
aaaaggacatcatagtgatgtaaagctcaaactataatggagttcatagaatggccaaaccaattgtgattatgaatctattataggcaaaggctaattc |
233 |
Q |
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||||||||| ||| ||| |||||||||| | | |||||||| |||| ||| | | || |||| ||||||||||||||||||||| |||||||||||| |
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| T |
38623398 |
aaaaggacaacatggtgttgtaaagctccatccataatggaattcacgaaataactagactaattctgattatgaatctattataggaaaaggctaattc |
38623299 |
T |
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| Q |
234 |
catgactgaaacccatgacctaatgacatgactatataactctaaccattgcactggcaccaagatccccttcctggaagaaaacag |
320 |
Q |
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| T |
38623298 |
catgactgaaactcatgacct----acatgac--tacaactctgacaattgcacttgcaccaaggtccccttcctagaagaaaacag |
38623218 |
T |
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