View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12667_low_2 (Length: 277)
Name: NF12667_low_2
Description: NF12667
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12667_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 242; Significance: 1e-134; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 9 - 262
Target Start/End: Original strand, 50242880 - 50243133
Alignment:
| Q |
9 |
gagcagagagagactccttgctaaaaaaggataccctgatgatgatttcaactataatgattccgctcctaaacgcagttgtttcgatcttgatgctctt |
108 |
Q |
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| T |
50242880 |
gagcagagagagactccttgctaaaaaaggataccctgatgatgatttcaactataatgattccgctcccaaacgcagttgttttgatcttgatgctctt |
50242979 |
T |
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| Q |
109 |
tctgaacgcgttgtcaacatccgcaatgtctttcgtgatttcattggaaaactctacgagatgggtcgttctgatcgacgtagagttgtttttgccatga |
208 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50242980 |
tctgaacgcgttgtcaacattcgcaatgtctttcgtgatttcattggaaaactctacgagatgggtcgttctgatcgacgtagagttgtttttgccatga |
50243079 |
T |
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| Q |
209 |
aagctggtttaagtttggctcttgtttctcttttcatttacattaaggaaaaac |
262 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50243080 |
aagctggtttaagtttggctcttgtttctcttttcatttacattaaggaaaaac |
50243133 |
T |
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