View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12668_high_3 (Length: 702)
Name: NF12668_high_3
Description: NF12668
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12668_high_3 |
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Alignment Details
Target: chr7 (Bit Score: 244; Significance: 1e-135; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 17 - 306
Target Start/End: Complemental strand, 7977177 - 7976882
Alignment:
| Q |
17 |
attacttggataagattcttgtgtcatacttgacaaatatactttttatgaaacaatattgacataatgaatcaaataaagggtaccatttttcaaaaac |
116 |
Q |
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| T |
7977177 |
attacttggataagattcttgtgtcatacttgacaaatatactttttatgaaacaatattgacataatgaatcaaataaagggtaccatgtttcaaaaac |
7977078 |
T |
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| Q |
117 |
tccatgtctttattttctatttgtatttacacctaatagtttcaactcgattatgtatcttatgcaaatgtaaataaatacattttgtaaatacaaagtt |
216 |
Q |
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| T |
7977077 |
tccatgtctttattttctatttgcatttacacctaattgtttcaactcaattatgtatcttatgcaaatgtaaataaatacattttgtaaatacaaagtt |
7976978 |
T |
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| Q |
217 |
ggggtaaatgatttagggatttcgtcacgatgtacgactc---gatttactgtactaatccaggcatgacggtttccc---ttgatttgtagatat |
306 |
Q |
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| T |
7976977 |
ggggtaaatgatttagggattttgtcacgatgtaggactcgatgatttactgtactaatccaggcatgacggtttcccttgttgatttgtagatat |
7976882 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 370 - 456
Target Start/End: Complemental strand, 7976859 - 7976773
Alignment:
| Q |
370 |
ggtttagtttagaactgacatggtatttttccagatcagtacatccatgatcttcatatttctagattcacagatgtttcctctttt |
456 |
Q |
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| T |
7976859 |
ggtttagtttagaactgacattgtatttttccagattagtacatctatgatctttatatttccagattcacgaatgtttcttctttt |
7976773 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 47; Significance: 2e-17; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 89 - 265
Target Start/End: Complemental strand, 659104 - 658931
Alignment:
| Q |
89 |
caaataaagggtaccatttttcaaaaactccatgtctttattttctatttgtatttacacctaatagtttcaactcgattatgtatcttatgcaaatgta |
188 |
Q |
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| T |
659104 |
caaataaagggtgtcatgttgcaaaaactccatgtctctattttttattttcatttagagccaatagtttgaacttgattatgtatcttat---tatgca |
659008 |
T |
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| Q |
189 |
aataaatacattttgtaaatacaaagttggggtaaatgatttagggatttcgtcacgatgtacgactcgatttactg |
265 |
Q |
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| T |
659007 |
tagaaatacaatttgtaaatacaatgttgggtttcataatttatagatttagtcacgatgtacaaattgatttactg |
658931 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 416 - 469
Target Start/End: Complemental strand, 51992798 - 51992745
Alignment:
| Q |
416 |
atgatcttcatatttctagattcacagatgtttcctcttttgttttattttaga |
469 |
Q |
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| T |
51992798 |
atgatcttcatatttccagattcacggatgctttcgtttttgttttattttaga |
51992745 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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