View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12668_high_4 (Length: 220)
Name: NF12668_high_4
Description: NF12668
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12668_high_4 |
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Alignment Details
Target: chr6 (Bit Score: 156; Significance: 5e-83; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 20 - 208
Target Start/End: Complemental strand, 341488 - 341300
Alignment:
| Q |
20 |
tcactttcactacccttgnnnnnnncttctctaatcaacgccgttagcatatcaacatgatgagcatcatcactttcagcattgatttcatttttgttac |
119 |
Q |
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| T |
341488 |
tcactttcactacccttgtttttttcttctctaatcaatgccgttaacatatcaacatgatgagcatcatcactttcagcattgatttcatttttgttac |
341389 |
T |
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| Q |
120 |
aatttttctttagctcttcgcgctttgaagcaatacacgaaaagaggaattgatcaaataccttgcatgcctctgtcattttcttctct |
208 |
Q |
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| T |
341388 |
aatttttctttagctcttcgcgctttgaagcaatacacgaaaagaggaattgatcaaataccttgcatgcctcagtcattttcttctct |
341300 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 45 - 208
Target Start/End: Complemental strand, 333171 - 333008
Alignment:
| Q |
45 |
cttctctaatcaacgccgttagcatatcaacatgatgagcatcatcactttcagcattgatttcatttttgttacaatttttctttagctcttcgcgctt |
144 |
Q |
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||||||||||||||| ||| |||| |||||||||||||||||| ||||||||| ||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
333171 |
cttctctaatcaacgtcgtaagcaaatcaacatgatgagcatcgtcactttcaacattgatttcatttttgttacaattttgctttagctcttcgcgctt |
333072 |
T |
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| Q |
145 |
tgaagcaatacacgaaaagaggaattgatcaaataccttgcatgcctctgtcattttcttctct |
208 |
Q |
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| T |
333071 |
tgaagctatacacgaaaataggaatttatcaaatactttgcatgcctcggtcatttttttctct |
333008 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 20 - 208
Target Start/End: Complemental strand, 337450 - 337262
Alignment:
| Q |
20 |
tcactttcactacccttgnnnnnnncttctctaatcaacgccgttagcatatcaacatgatgagcatcatcactttcagcattgatttcatttttgttac |
119 |
Q |
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|||||||||||||||||| |||||||||| || |||||||||| |||||||||||||||||||| ||||| | |||| |||||||||||||||| |
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| T |
337450 |
tcactttcactacccttgctattttcttctctaattaatgccgttagcaaatcaacatgatgagcatcattactttgaccattaatttcatttttgttac |
337351 |
T |
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| Q |
120 |
aatttttctttagctcttcgcgctttgaagcaatacacgaaaagaggaattgatcaaataccttgcatgcctctgtcattttcttctct |
208 |
Q |
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||||||||||||||||||| |||||||| ||||||||| | ||||||||||||||||| |||||||| || |||||||| |||||| |
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| T |
337350 |
cgtttttctttagctcttcgcattttgaagctatacacgaatataggaattgatcaaatactttgcatgcttcagtcatttttttctct |
337262 |
T |
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