View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12669_high_10 (Length: 225)
Name: NF12669_high_10
Description: NF12669
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12669_high_10 |
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Alignment Details
Target: chr7 (Bit Score: 157; Significance: 1e-83; HSPs: 12)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 18 - 206
Target Start/End: Original strand, 4783387 - 4783575
Alignment:
| Q |
18 |
aagctaaacataagtttcattcccaacaacacaaaccaattgaatcctagttatgcttacattaacggaatcgaagttgtgtctatgccttcttttctct |
117 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
4783387 |
aagctaaacataactttcattcccaacaacacaaaccaattgattcctagttatgctttcattaacggaatcgaagttgtgtctatgccttcttttctct |
4783486 |
T |
|
| Q |
118 |
attacacaaacctcagtgaccaagattatcatgtcaatttacctggttttgacaacacggaataccaagttcttaacgacaaagcttta |
206 |
Q |
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|||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||| || |||||||||||| ||||||||||| |
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| T |
4783487 |
attacacaaacctcagtgaccaagattatcttatcaatttacctggttttgacaacacggattatcaagttcttaactacaaagcttta |
4783575 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 18 - 206
Target Start/End: Original strand, 4815816 - 4816004
Alignment:
| Q |
18 |
aagctaaacataagtttcattcccaacaacacaaaccaattgaatcctagttatgcttacattaacggaatcgaagttgtgtctatgccttcttttctct |
117 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
4815816 |
aagctaaacataactttcattcccaacaacacaaaccaattgagtcctagttatgctttcattaacggaatcgaagttgtgtctatgccttcttttctct |
4815915 |
T |
|
| Q |
118 |
attacacaaacctcagtgaccaagattatcatgtcaatttacctggttttgacaacacggaataccaagttcttaacgacaaagcttta |
206 |
Q |
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|||||||||||||||||||||||||||||| | |||| |||||||||| |||||||||||||||||||||||||||| ||||||||||| |
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| T |
4815916 |
attacacaaacctcagtgaccaagattatcgtatcaagttacctggttctgacaacacggaataccaagttcttaacaacaaagcttta |
4816004 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 22 - 202
Target Start/End: Original strand, 4696746 - 4696926
Alignment:
| Q |
22 |
taaacataagtttcattcccaacaacacaaaccaattgaatcctagttatgcttacattaacggaatcgaagttgtgtctatgccttcttttctctatta |
121 |
Q |
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||||||||| ||||||||||| ||||| |||||| | |||||| |||||||| |||||||||||| ||||||||||| |||||||||||||||||||| |
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| T |
4696746 |
taaacataactttcattcccagcaacataaaccagtcaaatccttattatgctttcattaacggaatagaagttgtgtcaatgccttcttttctctatta |
4696845 |
T |
|
| Q |
122 |
cacaaacctcagtgaccaagattatcatgtcaatttacctggttttgacaacacggaataccaagttcttaacgacaaagc |
202 |
Q |
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||||||||||||||||| | | |||||| | | | || || || ||||||| ||| ||||||||||||||||||||||| |
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| T |
4696846 |
cacaaacctcagtgacccaaaatatcatttgatatcacttgacttagacaacagggactaccaagttcttaacgacaaagc |
4696926 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 65 - 147
Target Start/End: Complemental strand, 4644203 - 4644121
Alignment:
| Q |
65 |
tagttatgcttacattaacggaatcgaagttgtgtctatgccttcttttctctattacacaaacctcagtgaccaagattatc |
147 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4644203 |
tagttatgctttcattaacggaatcgaagttgtgtctatgccttcttttctctattacacaaacctcagtgaccaagattatc |
4644121 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 18 - 132
Target Start/End: Complemental strand, 4654039 - 4653925
Alignment:
| Q |
18 |
aagctaaacataagtttcattcccaacaacacaaaccaattgaatcctagttatgcttacattaacggaatcgaagttgtgtctatgccttcttttctct |
117 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||| | |||||| |||||||| |||||| ||||| |||||||||||||||||||||||||||| |
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| T |
4654039 |
aagctaaacataactttcattcccaacaacacaaaccattcaaatccttattatgctttcattaatggaattgaagttgtgtctatgccttcttttctct |
4653940 |
T |
|
| Q |
118 |
attacacaaacctca |
132 |
Q |
| |
|
||||| ||||||||| |
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|
| T |
4653939 |
attactcaaacctca |
4653925 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 69 - 205
Target Start/End: Complemental strand, 4673195 - 4673059
Alignment:
| Q |
69 |
tatgcttacattaacggaatcgaagttgtgtctatgccttcttttctctattacacaaacctcagtgaccaagattatcatgtcaatttacctggttttg |
168 |
Q |
| |
|
||||||| |||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||| | |||||||| | || | || || || | |
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| T |
4673195 |
tatgctttcattaacggaatcgaaattgtgtcaatgccttcttttctctattacacaaacctcagtgacccaaattatcatttgaaatcacttgacttag |
4673096 |
T |
|
| Q |
169 |
acaacacggaataccaagttcttaacgacaaagcttt |
205 |
Q |
| |
|
||||||||||||||||| ||| |||||| |||||||| |
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| T |
4673095 |
acaacacggaataccaaattcataacgaaaaagcttt |
4673059 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 18 - 129
Target Start/End: Original strand, 4845564 - 4845675
Alignment:
| Q |
18 |
aagctaaacataagtttcattcccaacaacacaaaccaattgaatcctagttatgcttacattaacggaatcgaagttgtgtctatgccttcttttctct |
117 |
Q |
| |
|
||||||||||||| |||| |||| ||||||| |||| ||||||||||| |||||||| | |||||||||||||||||||||| |||||||||||||||| |
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| T |
4845564 |
aagctaaacataactttctttccgaacaacataaacgaattgaatcctttttatgctttcgttaacggaatcgaagttgtgtcgatgccttcttttctct |
4845663 |
T |
|
| Q |
118 |
attacacaaacc |
129 |
Q |
| |
|
|||||||||||| |
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| T |
4845664 |
attacacaaacc |
4845675 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 17 - 138
Target Start/End: Complemental strand, 4637401 - 4637280
Alignment:
| Q |
17 |
aaagctaaacataagtttcattcccaacaacacaaaccaattgaatcctagttatgcttacattaacggaatcgaagttgtgtctatgccttcttttctc |
116 |
Q |
| |
|
|||| ||||||||| ||||||||| |||| || |||||||| |||||| ||||||||| |||||||| |||||||||||||| ||||||||||||||| |
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|
| T |
4637401 |
aaagttaaacataactttcattcctaacagcataaaccaatcaaatccttgttatgcttttattaacgggatcgaagttgtgtcaatgccttcttttctc |
4637302 |
T |
|
| Q |
117 |
tattacacaaacctcagtgacc |
138 |
Q |
| |
|
|||||||||||||||| ||||| |
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| T |
4637301 |
tattacacaaacctcaatgacc |
4637280 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 18 - 205
Target Start/End: Original strand, 4711624 - 4711811
Alignment:
| Q |
18 |
aagctaaacataagtttcattcccaacaacacaaaccaattgaatcctagttatgcttacattaacggaatcgaagttgtgtctatgccttcttttctct |
117 |
Q |
| |
|
||||||| ||||| ||||||||| ||||||| ||| || | |||||| |||||||| |||||||||||||||| |||||||||||||||||||||||| |
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|
| T |
4711624 |
aagctaagcataactttcattccaaacaacataaatcattcaaatccttattatgctttcattaacggaatcgaaattgtgtctatgccttcttttctct |
4711723 |
T |
|
| Q |
118 |
attacacaaacctcagtgaccaagattatcatgtcaatttacctggttttgacaacacggaataccaagttcttaacgacaaagcttt |
205 |
Q |
| |
|
||||||| |||| | ||||| | | || | | | || | || || ||||||||||||||||||||| ||| ||||||||||||||| |
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|
| T |
4711724 |
attacacggaccttaatgacccaaaataccttttgaaatcacttgactttgacaacacggaataccaaattcataacgacaaagcttt |
4711811 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #10
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 18 - 202
Target Start/End: Complemental strand, 4864468 - 4864281
Alignment:
| Q |
18 |
aagctaaacataagtttcattcc---caacaacacaaaccaattgaatcctagttatgcttacattaacggaatcgaagttgtgtctatgccttcttttc |
114 |
Q |
| |
|
||||||||||||| ||||||||| ||| || | ||| |||| |||||| |||||| | |||||| ||||| ||||| ||||||||||||||||||| |
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|
| T |
4864468 |
aagctaaacataactttcattccggccaataatataaatcaatcaaatccttattatgccttcattaatggaatagaagtcgtgtctatgccttcttttc |
4864369 |
T |
|
| Q |
115 |
tctattacacaaacctcagtgaccaagattatcatgtcaatttacctggttttgacaacacggaataccaagttcttaacgacaaagc |
202 |
Q |
| |
|
| |||||||||||||||| ||||| | | ||| || | || | || || |||||||||||| | ||||||||||||||||||||||| |
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|
| T |
4864368 |
tatattacacaaacctcaatgacccaaaatattatttgaaatcacttgactttgacaacacgaactaccaagttcttaacgacaaagc |
4864281 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #11
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 32 - 149
Target Start/End: Complemental strand, 4667467 - 4667353
Alignment:
| Q |
32 |
tttcattcccaacaacacaaaccaattgaatcctagttatgcttacattaacggaatcgaagttgtgtctatgccttcttttctctattacacaaacctc |
131 |
Q |
| |
|
|||||||||||| |||||||||||||| ||| || | ||||| ||| |||||||| || ||||||||||||| |||||||||||||||||||||||| |
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| T |
4667467 |
tttcattcccaaaaacacaaaccaattaaatgct---tttgctttcatcaacggaattgagattgtgtctatgccgtcttttctctattacacaaacctc |
4667371 |
T |
|
| Q |
132 |
agtgaccaagattatcat |
149 |
Q |
| |
|
||||||| | |||||||| |
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|
| T |
4667370 |
agtgacccaaattatcat |
4667353 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #12
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 72 - 137
Target Start/End: Complemental strand, 4631416 - 4631351
Alignment:
| Q |
72 |
gcttacattaacggaatcgaagttgtgtctatgccttcttttctctattacacaaacctcagtgac |
137 |
Q |
| |
|
|||| ||| |||||||| || ||||||||||||||||||||||||||||||| || ||||||||| |
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|
| T |
4631416 |
gctttcatcaacggaattgagattgtgtctatgccttcttttctctattacactaatctcagtgac |
4631351 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 68 - 137
Target Start/End: Original strand, 18925344 - 18925413
Alignment:
| Q |
68 |
ttatgcttacattaacggaatcgaagttgtgtctatgccttcttttctctattacacaaacctcagtgac |
137 |
Q |
| |
|
|||||||| ||| |||||||| || | ||||| ||||||||||||||||||||||||||||||| |||| |
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|
| T |
18925344 |
ttatgctttcatcaacggaattgagatcgtgtccatgccttcttttctctattacacaaacctcaatgac |
18925413 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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