View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12669_high_3 (Length: 362)
Name: NF12669_high_3
Description: NF12669
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12669_high_3 |
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Alignment Details
Target: chr3 (Bit Score: 317; Significance: 1e-179; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 12 - 348
Target Start/End: Complemental strand, 52379731 - 52379396
Alignment:
| Q |
12 |
acagacgttttgaggatgcacttgcagtatatggtccagaagatccaaatcggtggcaacatgtagctaatgctgttggtggaaaatccatacaagaggt |
111 |
Q |
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| T |
52379731 |
acagacgttttgaggatgcacttgcagtatatggtccagaagatccaaatcggtggcaacatgtagctaatgctgttggtggaaaatccatacaagaggt |
52379632 |
T |
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| Q |
112 |
gaaaatgcattacgagatcctcaaggaagatctcatacgaattgagcatgatcaaatcccactgccaacatacaggggaggtgctggtatcaatatcacc |
211 |
Q |
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| T |
52379631 |
gaaaatgcattacgagatcctcaaggaagatctcatacgaattgagcatgatcaaatcccactgccaacatacaggggaggtgctggtatcaatatcacc |
52379532 |
T |
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| Q |
212 |
aatggaaggcaatttggcaatgagcaaaggtaattatgcaatcaatttcattctaaagccatcatcttaaaaaatccatgcagtgcataatgttggttaa |
311 |
Q |
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| T |
52379531 |
aatggaaggcaatttggcaatgagcaaaggtaattatgcaatcaatttcattgtaaagctatcatctta-aaaatccatgcagtacataatgttggttaa |
52379433 |
T |
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| Q |
312 |
gttttcatgacaagtgctaatattttgtagttgctac |
348 |
Q |
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| T |
52379432 |
gttttcatgacaagtgctaatattttgtagttgctac |
52379396 |
T |
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