View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12669_low_10 (Length: 259)

Name: NF12669_low_10
Description: NF12669
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12669_low_10
NF12669_low_10
[»] chr4 (3 HSPs)
chr4 (19-253)||(21833420-21833654)
chr4 (105-221)||(53761012-53761128)
chr4 (161-207)||(7308309-7308355)
[»] chr1 (1 HSPs)
chr1 (83-198)||(19467623-19467738)
[»] chr6 (2 HSPs)
chr6 (83-192)||(6588459-6588568)
chr6 (90-221)||(6416809-6416940)
[»] chr3 (2 HSPs)
chr3 (90-227)||(51763583-51763720)
chr3 (90-221)||(13469857-13469988)
[»] chr7 (1 HSPs)
chr7 (98-211)||(10615440-10615553)
[»] chr5 (1 HSPs)
chr5 (83-192)||(28532580-28532689)
[»] chr8 (3 HSPs)
chr8 (154-207)||(17635904-17635957)
chr8 (154-227)||(18318891-18318964)
chr8 (154-227)||(18314885-18314958)


Alignment Details
Target: chr4 (Bit Score: 175; Significance: 3e-94; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 19 - 253
Target Start/End: Original strand, 21833420 - 21833654
Alignment:
Q  19 atatagtgaaaagtacattcttggctaccccttatatagtgaaaagtacattctctatgttgaaggggtaaaagctctttcacttgcacttatcaaactc 118  Q
    ||||||| |||||||||||||| | |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21833420 atatagtcaaaagtacattcttagataccccttatatggtgaaaagtacattctctatgttgaaggggtaaaagctctttcacttgcacttatcaaactc 21833519  T
Q  119 cgaaaggttaatctttctggcttccccataaacagtcaatctcttttccacttgttaaagaattgtaagcttcttgaagaagccatcatgtttgattgtg 218  Q
    || |||||||||||||||||||| |||||||||| ||||||||||||||||||| ||||||||||||||||||||||||| | |||||||||||||||||    
T  21833520 cgcaaggttaatctttctggctttcccataaacaatcaatctcttttccacttgctaaagaattgtaagcttcttgaagaggtcatcatgtttgattgtg 21833619  T
Q  219 atcaaataagaggaacaggcattgcttcatctctc 253  Q
    ||||||||||  ||  ||||||||||||| |||||    
T  21833620 atcaaataagcagagaaggcattgcttcagctctc 21833654  T

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Target: chr4; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 105 - 221
Target Start/End: Original strand, 53761012 - 53761128
Alignment:
Q  105 cacttatcaaactccgaaaggttaatctttctggcttccccataaacagtcaatctcttttccacttgttaaagaattgtaagcttcttgaagaagccat 204  Q
    ||||| |||||||||| ||||||||||||||||||||  |||||| |   ||||| |||||||||||||| ||||||||||| |||||| |||| | |||    
T  53761012 cacttttcaaactccgtaaggttaatctttctggcttaaccataatcgaacaatcacttttccacttgttgaagaattgtaatcttcttcaagaggtcat 53761111  T
Q  205 catgtttgattgtgatc 221  Q
    | ||||| | |||||||    
T  53761112 cttgtttaactgtgatc 53761128  T

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Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 161 - 207
Target Start/End: Complemental strand, 7308355 - 7308309
Alignment:
Q  161 cttttccacttgttaaagaattgtaagcttcttgaagaagccatcat 207  Q
    |||||||||||||| ||||||||||||||||| ||||| ||||||||    
T  7308355 cttttccacttgtttaagaattgtaagcttctggaagaggccatcat 7308309  T

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Target: chr1 (Bit Score: 52; Significance: 7e-21; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 83 - 198
Target Start/End: Original strand, 19467623 - 19467738
Alignment:
Q  83 ggggtaaaagctctttcacttgcacttatcaaactccgaaaggttaatctttctggcttccccataaacagtcaatctcttttccacttgttaaagaatt 182  Q
    |||||| | |||||||||||||||||| |||||||||| |||||||||||||||||||| ||||| | |    ||||  |||| |||||||| || ||||    
T  19467623 ggggtagaggctctttcacttgcacttctcaaactccgcaaggttaatctttctggctttcccatgagcgacaaatcgatttttcacttgtttaacaatt 19467722  T
Q  183 gtaagcttcttgaaga 198  Q
    ||||||||||||||||    
T  19467723 gtaagcttcttgaaga 19467738  T

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Target: chr6 (Bit Score: 50; Significance: 1e-19; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 83 - 192
Target Start/End: Original strand, 6588459 - 6588568
Alignment:
Q  83 ggggtaaaagctctttcacttgcacttatcaaactccgaaaggttaatctttctggcttccccataaacagtcaatctcttttccacttgttaaagaatt 182  Q
    |||||| | ||||| ||||| |||||| ||||||| || |||||||||||||||  ||| ||||| |||| |||||| |||||||||||||| || ||||    
T  6588459 ggggtacaggctctctcactcgcacttttcaaacttcgcaaggttaatctttcttactttcccatcaacaatcaatcgcttttccacttgttcaacaatt 6588558  T
Q  183 gtaagcttct 192  Q
    ||||||||||    
T  6588559 gtaagcttct 6588568  T

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Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 90 - 221
Target Start/End: Complemental strand, 6416940 - 6416809
Alignment:
Q  90 aagctctttcacttgcacttatcaaactccgaaaggttaatctttctggcttccccataaacagtcaatctcttttccacttgttaaagaattgtaagct 189  Q
    ||||||| |||||||||||| | |||||||| || |||||||||||| | || ||  ||||||  ||||| |||||||| || ||  | || ||||||||    
T  6416940 aagctctatcacttgcactttttaaactccgcaaagttaatctttctagatttcctgtaaacaaccaatcccttttccagttattccacaactgtaagct 6416841  T
Q  190 tcttgaagaagccatcatgtttgattgtgatc 221  Q
    ||| ||||||| ||||||||||  ||||||||    
T  6416840 tctcgaagaagtcatcatgtttagttgtgatc 6416809  T

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Target: chr3 (Bit Score: 50; Significance: 1e-19; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 90 - 227
Target Start/End: Original strand, 51763583 - 51763720
Alignment:
Q  90 aagctctttcacttgcacttatcaaactccgaaaggttaatctttctggcttccccataaacagtcaatctcttttccacttgttaaagaattgtaagct 189  Q
    |||| ||||||||||| ||| ||||||| || ||||||||| |||||||||  |||||||||| |||||| ||||||||| |  ||   || ||||||||    
T  51763583 aagcactttcacttgctcttttcaaactgcgtaaggttaatttttctggctgtcccataaacaatcaatcgcttttccaccttctatgcaactgtaagct 51763682  T
Q  190 tcttgaagaagccatcatgtttgattgtgatcaaataa 227  Q
    |||  |||| | |||||||||||| |||||||||||||    
T  51763683 tctccaagatgtcatcatgtttgactgtgatcaaataa 51763720  T

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Target: chr3; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 90 - 221
Target Start/End: Original strand, 13469857 - 13469988
Alignment:
Q  90 aagctctttcacttgcacttatcaaactccgaaaggttaatctttctggcttccccataaacagtcaatctcttttccacttgttaaagaattgtaagct 189  Q
    ||||||| |||||||||||| | |||||||| ||||||||||||||| | || || |||||||  | ||| ||||||||||| ||  | || ||||||||    
T  13469857 aagctctatcacttgcactttttaaactccgcaaggttaatctttctagttttcctataaacaacctatcacttttccacttattccacaactgtaagct 13469956  T
Q  190 tcttgaagaagccatcatgtttgattgtgatc 221  Q
    ||| ||||||| ||||||||||  ||||||||    
T  13469957 tctcgaagaagtcatcatgtttagttgtgatc 13469988  T

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Target: chr7 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 98 - 211
Target Start/End: Complemental strand, 10615553 - 10615440
Alignment:
Q  98 tcacttgcacttatcaaactccgaaaggttaatctttctggcttccccataaacagtcaatctcttttccacttgttaaagaattgtaagcttcttgaag 197  Q
    |||||| ||||| | |||||||| ||||||||||||||| | || | |||||||| |||||| ||| |||||||| |  | || ||||||||||||||||    
T  10615553 tcactttcactttttaaactccgcaaggttaatctttctagttttctcataaacaatcaatcccttctccacttgctcgacaactgtaagcttcttgaag 10615454  T
Q  198 aagccatcatgttt 211  Q
    | | |||| |||||    
T  10615453 aggtcatcttgttt 10615440  T

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Target: chr5 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 83 - 192
Target Start/End: Complemental strand, 28532689 - 28532580
Alignment:
Q  83 ggggtaaaagctctttcacttgcacttatcaaactccgaaaggttaatctttctggcttccccataaacagtcaatctcttttccacttgttaaagaatt 182  Q
    |||||| | ||||| |||||| |||||  ||||||||| |||||||||||||||  ||| ||||| ||||  ||||| |||||||||||||| |  || |    
T  28532689 ggggtagaggctctctcactttcacttcacaaactccgcaaggttaatctttcttcctttcccatcaacaaccaatcacttttccacttgttcagcaact 28532590  T
Q  183 gtaagcttct 192  Q
    ||||||||||    
T  28532589 gtaagcttct 28532580  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000004; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 154 - 207
Target Start/End: Original strand, 17635904 - 17635957
Alignment:
Q  154 tcaatctcttttccacttgttaaagaattgtaagcttcttgaagaagccatcat 207  Q
    |||||||||| || ||||||| |||||||| ||| |||||||||||||||||||    
T  17635904 tcaatctcttctcaacttgttcaagaattggaagtttcttgaagaagccatcat 17635957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 154 - 227
Target Start/End: Original strand, 18318891 - 18318964
Alignment:
Q  154 tcaatctcttttccacttgttaaagaattgtaagcttcttgaagaagccatcatgtttgattgtgatcaaataa 227  Q
    |||||| ||| |||||||||| ||||| || |||||||| ||||| ||||||||  |||| |||||||||||||    
T  18318891 tcaatcgcttatccacttgttcaagaactggaagcttctcgaagaggccatcatacttgactgtgatcaaataa 18318964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 154 - 227
Target Start/End: Original strand, 18314885 - 18314958
Alignment:
Q  154 tcaatctcttttccacttgttaaagaattgtaagcttcttgaagaagccatcatgtttgattgtgatcaaataa 227  Q
    |||||| |||||||||||||| ||||| ||||||||||| |||||  | ||||| ||| | ||| |||||||||    
T  18314885 tcaatcgcttttccacttgttcaagaactgtaagcttctcgaagagacaatcatattttactgtcatcaaataa 18314958  T

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