View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12669_low_12 (Length: 245)
Name: NF12669_low_12
Description: NF12669
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12669_low_12 |
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Alignment Details
Target: chr7 (Bit Score: 154; Significance: 8e-82; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 154; E-Value: 8e-82
Query Start/End: Original strand, 14 - 226
Target Start/End: Original strand, 44801453 - 44801662
Alignment:
| Q |
14 |
agatgaaagttagggtttctaagtgtttgagagagatggtttcttatgaaagggaccgtgtgaaagtggacnnnnnnnnaccatcacatatgtaagacat |
113 |
Q |
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| T |
44801453 |
agatgaaagttagggtttctaagtgtttgagagagatggtttcttatgaaagggaccgtgtgaaagtggacttttttttaccatcacatatgtaagacat |
44801552 |
T |
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| Q |
114 |
aaattttactacaatttaattnnnnnnnctatttgcatagtgctcgttgtattttacatattagattggtttagtttgtccggttcactagttcatattc |
213 |
Q |
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| T |
44801553 |
aaattttactacaatttaattaaaaaaactatttgcatagtgctcgttgtattttacatattagattggtttagtttgtccggttcactagttca---tc |
44801649 |
T |
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| Q |
214 |
taatcaacttata |
226 |
Q |
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| T |
44801650 |
taatcaacttata |
44801662 |
T |
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