View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12669_low_15 (Length: 225)
Name: NF12669_low_15
Description: NF12669
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12669_low_15 |
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Alignment Details
Target: chr3 (Bit Score: 173; Significance: 4e-93; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 17 - 208
Target Start/End: Complemental strand, 1724873 - 1724681
Alignment:
| Q |
17 |
taggtaatttgccagtggtaaaagctatcatcagtgggagacttatttttagaaacttag-tatctagtggaatgcaatgagtatacttttcaatattat |
115 |
Q |
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| T |
1724873 |
taggtaatttgccagtggtaaaagctatcatcagtgggagacttatttttagaaacttaggtatctagtggaatgcaatgagtatacttttcaacattat |
1724774 |
T |
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| Q |
116 |
atatttgttctattggccatcttgagtccttgtactgattaatgggattgattgattaattaatgaatgtgctcgtccttctcctgatgaagt |
208 |
Q |
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| T |
1724773 |
atatttgttctattggccatcttgagtccttgtactgattaatgggattgattgattaattaattaatgtgctcgtccatctcctgatgaagt |
1724681 |
T |
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Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 77 - 138
Target Start/End: Complemental strand, 1746435 - 1746373
Alignment:
| Q |
77 |
tatctagtggaa-tgcaatgagtatacttttcaatattatatatttgttctattggccatctt |
138 |
Q |
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| T |
1746435 |
tatctagtggaaatgcaatcaatatacttttcaacattatatatttgttctattggccatctt |
1746373 |
T |
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