View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12669_low_17 (Length: 213)
Name: NF12669_low_17
Description: NF12669
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12669_low_17 |
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Alignment Details
Target: chr8 (Bit Score: 168; Significance: 3e-90; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 168; E-Value: 3e-90
Query Start/End: Original strand, 20 - 199
Target Start/End: Original strand, 32092635 - 32092814
Alignment:
| Q |
20 |
gaagccaccctttttaccaccagacatgtcaaaccggagcttctcttctggcggcaaatcaaagaaccctttagcaaaacgagtcatctcagaaataagc |
119 |
Q |
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| T |
32092635 |
gaagccaccctttttaccaccagacatgtcaaaccggagcttctcttctggcggcaaatcaaagaaccctttagcaaaacgagtcatctcagaaataagc |
32092734 |
T |
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| Q |
120 |
tttgagtccaaaccatgatcaacaacttgaaagataccccagttttcacaagcttctacaatcttgttacatatctctgc |
199 |
Q |
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| T |
32092735 |
tttgaatccacaccatgatcaacaacttgaaagataccccagttttcacaagcttctacaatcttgttgcatatctctgc |
32092814 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 84; E-Value: 4e-40
Query Start/End: Original strand, 20 - 187
Target Start/End: Original strand, 32069621 - 32069788
Alignment:
| Q |
20 |
gaagccaccctttttaccaccagacatgtcaaaccggagcttctcttctggcggcaaatcaaagaaccctttagcaaaacgagtcatctcagaaataagc |
119 |
Q |
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||||||||||||||||||||| || | ||||||||| |||||||| || || ||||||||||||||||||||||| ||||| |||||||||||||| ||| |
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| T |
32069621 |
gaagccaccctttttaccaccggagaggtcaaaccgaagcttctcctccggtggcaaatcaaagaaccctttagccaaacgggtcatctcagaaatgagc |
32069720 |
T |
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| Q |
120 |
tttgagtccaaaccatgatcaacaacttgaaagataccccagttttcacaagcttctacaatcttgtt |
187 |
Q |
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| T |
32069721 |
ttttgatctacaccatgatcaacaatttggaagataccccagttctcgcaagcctccacaatcttgtt |
32069788 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 92; Significance: 7e-45; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 92; E-Value: 7e-45
Query Start/End: Original strand, 20 - 183
Target Start/End: Original strand, 23310979 - 23311142
Alignment:
| Q |
20 |
gaagccaccctttttaccaccagacatgtcaaaccggagcttctcttctggcggcaaatcaaagaaccctttagcaaaacgagtcatctcagaaataagc |
119 |
Q |
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||||||||||||||||||| |||||||||||||| | |||||||||||||| |||||||||||||||||||||| ||||| |||||||||||||| ||| |
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| T |
23310979 |
gaagccaccctttttaccatcagacatgtcaaactgaagcttctcttctggtggcaaatcaaagaaccctttagaaaaactggtcatctcagaaatgagc |
23311078 |
T |
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| Q |
120 |
tttgagtccaaaccatgatcaacaacttgaaagataccccagttttcacaagcttctacaatct |
183 |
Q |
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||| |||| ||||||||||||||||| |||||||||||||| || ||||||| | |||||| |
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| T |
23311079 |
ttttgatccacgccatgatcaacaacttggaagataccccagttctcgcaagcttttgcaatct |
23311142 |
T |
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