View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12669_low_2 (Length: 457)
Name: NF12669_low_2
Description: NF12669
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12669_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 411; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 411; E-Value: 0
Query Start/End: Original strand, 16 - 448
Target Start/End: Complemental strand, 43919288 - 43918859
Alignment:
| Q |
16 |
gtatttgacgtgactttgtcatctaaataacattttactagtgatacttcataatattagagataaataagacaatgttattatcttcggtagttatcat |
115 |
Q |
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| T |
43919288 |
gtatttgacgtgactttgtcatctaaataacattttactagtgatacttcataatattagagataaataagacaatgttattatcttcggtagttatcat |
43919189 |
T |
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| Q |
116 |
aatggtatttacaagggaaaataaaaaataggacaatgttcttggtctaaccataaaaatatacataaatatgtgatggtggaaaaggagaataatcatc |
215 |
Q |
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| T |
43919188 |
aatggtatttacaagggaaaataaaaaataggacaatgttcttggtctaaccataaaaatatacataaatatgtgatggtggaaaaggagaataatcatc |
43919089 |
T |
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| Q |
216 |
gcaagtggttaggatagaaacccctcaaagtccatatatatcttatagaaccgaaccggtcagattcttccttcagttcagcagaactagaaaatggtta |
315 |
Q |
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| T |
43919088 |
gcaagtggttaggatagaaacccctcaaagtccatatatatcttatagaaccgaaccggtcagattcttccttcagttcagcagaactagaaaatggtta |
43918989 |
T |
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| Q |
316 |
catttacgtacctccaaatctaatactattacacaataatttccaaactttcagagatacccttttctctatttaattcatcttccttttttcgtttcta |
415 |
Q |
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| T |
43918988 |
catttacgtacctccaaatctaa---tattacacaataatttccaaactttcagagatacccttttctctatttaattcatcttccttttttcgtttcta |
43918892 |
T |
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| Q |
416 |
ctattttccaacaatagacaaaaatccctttgc |
448 |
Q |
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| T |
43918891 |
ctattttccaacaatatacaaaaattcctttgc |
43918859 |
T |
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