View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12669_low_3 (Length: 449)
Name: NF12669_low_3
Description: NF12669
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12669_low_3 |
 | |
|
| [»] chr5 (12 HSPs) |
| |
|
Alignment Details
Target: chr5 (Bit Score: 336; Significance: 0; HSPs: 12)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 7 - 449
Target Start/End: Complemental strand, 39475762 - 39475317
Alignment:
| Q |
7 |
tgaggttagagacggcttgtttgacgtttggtttgtgagcatcaaggagagcgttcattgcgga---acctggatcagaggtttggggaagagaaacttc |
103 |
Q |
| |
|
||||||| ||||| |||||||| ||||||||||| ||||| || |||||||| |||| | || ||||||||| | | || |||||||||||||||| |
|
|
| T |
39475762 |
tgaggttggagacagcttgttttacgtttggtttctgagcttcgaggagagctgtcatggaagagaaacctggatcggtgtttgggggaagagaaacttc |
39475663 |
T |
|
| Q |
104 |
tggaaggttgatgatgttgagagaatctgagataggaagggatttagtgttgacatcattttctgatatgtgtgggaatttgataactaaaacagttact |
203 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
39475662 |
tggaaggttgatgatgttgagagattctgagataggaagggatttagtgttgacatcattttctgttatgtgtgggaatttgataactaaaacagttact |
39475563 |
T |
|
| Q |
204 |
cggagacggttatcacgattgattagaagcttcgcgaattcaagggtggaaactagatggctcacaccaggaaaagggataaacaccacttctgctttct |
303 |
Q |
| |
|
||||||||||||||||||||||||||||||||| | || ||||| ||||||| ||||||||||| ||| ||||||||||||||||||||||||||||||| |
|
|
| T |
39475562 |
cggagacggttatcacgattgattagaagcttcacaaactcaagtgtggaaattagatggctcagaccgggaaaagggataaacaccacttctgctttct |
39475463 |
T |
|
| Q |
304 |
tcatcttggatatacacttgatcagtgtgactgtgttttgaattgttgttttgatgttcctgttatttaaataggaataggaatagtgtagataattatt |
403 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39475462 |
tcatcttggatatacacttgatcagtgtgactgtgttttgaattgttgttttgatgttcctgttatttaaataggaataggaatagtgtagataattatt |
39475363 |
T |
|
| Q |
404 |
agtatgaatataattatattatactaggagtgtttgatgcatgttc |
449 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39475362 |
agtatgaatataattatattatactaggagtgtttgatgcatgttc |
39475317 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 7 - 311
Target Start/End: Complemental strand, 39451256 - 39450949
Alignment:
| Q |
7 |
tgaggttagagacggcttgtttgacgtttggtttgtgagcatcaaggagagcgttcattg---cggaacctggatcagaggtttggggaagagaaacttc |
103 |
Q |
| |
|
|||||||||| |||||||||||||| |||||||| ||||| || |||||||| ||| | || ||||||||| | | || | |||||||||||||| |
|
|
| T |
39451256 |
tgaggttagaaacggcttgtttgacatttggtttctgagcttcgaggagagcaggcatggaagcgaaacctggattggtgtttggaggaagagaaacttc |
39451157 |
T |
|
| Q |
104 |
tggaaggttgatgatgttgagagaatctgagataggaagggatttagtgttgacatcattttctgatatgtgtgggaatttgataactaaaacagttact |
203 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
39451156 |
tggaaggttgatgatgttgagagaatctgagataggaagggatttagtgttgacatcattttctgatatatgtgggaatttgataactaaaacagttact |
39451057 |
T |
|
| Q |
204 |
cggagacggttatcacgattgattagaagcttcgcgaattcaagggtggaaactagatggctcacaccaggaaaagggataaacaccacttctgctttct |
303 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39451056 |
cggagacggttatcacgattgattagaagcttcgcgaattcaagggtggaaactagatggctcacaccaggaaaagggataaacaccacttctgctttct |
39450957 |
T |
|
| Q |
304 |
tcatcttg |
311 |
Q |
| |
|
|||||||| |
|
|
| T |
39450956 |
tcatcttg |
39450949 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 171; E-Value: 1e-91
Query Start/End: Original strand, 1 - 307
Target Start/End: Original strand, 39464444 - 39464750
Alignment:
| Q |
1 |
tgacattgaggttagagacggcttgtttgacgtttggtttgtgagcatcaaggagagcgttcattgcggaacctggatcagaggtttggggaagagaaac |
100 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
39464444 |
tgacatcgaggttagagacggcttgtttgacgtttggtttgtgagcatcaaggagagcgttcatagcggaacctggatcagaggtttggggaagagaaac |
39464543 |
T |
|
| Q |
101 |
ttctggaaggttgatgatgttgagagaatctgagataggaagggatttagtgttgacatcattttctgatatgtgtgggaatttgataactaaaacagtt |
200 |
Q |
| |
|
||||||||||||||||| || |||||||| || || |||| ||||||||||| |||||| ||||| | ||||||| |||||| ||||| | ||| |
|
|
| T |
39464544 |
ttctggaaggttgatgacattaagagaatcagatatgggaatggatttagtgtagacatcggattctgcggtttgtgggagtttgatgactaagatggtt |
39464643 |
T |
|
| Q |
201 |
actcggagacggttatcacgattgattagaagcttcgcgaattcaagggtggaaactagatggctcacaccaggaaaagggataaacaccacttctgctt |
300 |
Q |
| |
|
| |||||||||||||||||| ||||||||||||||||| || ||||||| ||||||||||| | ||| | ||||||||||||||||| |||||||||| |
|
|
| T |
39464644 |
attcggagacggttatcacggttgattagaagcttcgcaaactcaagggcagaaactagatgacctacagcgggaaaagggataaacactacttctgctt |
39464743 |
T |
|
| Q |
301 |
tcttcat |
307 |
Q |
| |
|
||||||| |
|
|
| T |
39464744 |
tcttcat |
39464750 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 7 - 313
Target Start/End: Complemental strand, 39472289 - 39471983
Alignment:
| Q |
7 |
tgaggttagagacggcttgtttgacgtttggtttgtgagcatcaaggagagcgttcattgcggaacctggatcagaggtttggggaagagaaacttctgg |
106 |
Q |
| |
|
|||||||||| || ||||||||||||||||||| ||||| || ||||| || |||| | || |||| |||| | | || ||| ||||||| |||||| |
|
|
| T |
39472289 |
tgaggttagatactacttgtttgacgtttggtttctgagcttcgaggagcgcagtcatagagggaccttgatctgtgtttggggcaagagaacattctgg |
39472190 |
T |
|
| Q |
107 |
aaggttgatgatgttgagagaatctgagataggaagggatttagtgttgacatcattttctgatatgtgtgggaatttgataactaaaacagttactcgg |
206 |
Q |
| |
|
|||||||||||||| ||| ||||| |||||||||||||||||||||| |||||| |||||| ||||||||||||||||||||||||||||||| |||| |
|
|
| T |
39472189 |
aaggttgatgatgtggagtgaatcggagataggaagggatttagtgtagacatcggtttctgtgatgtgtgggaatttgataactaaaacagttattcgg |
39472090 |
T |
|
| Q |
207 |
agacggttatcacgattgattagaagcttcgcgaattcaagggtggaaactagatggctcacaccaggaaaagggataaacaccacttctgctttcttca |
306 |
Q |
| |
|
|||||||||||||| ||||||||||||||||| || || || | ||||||| ||| | | || | |||||||||| ||||||||||||||||||||||| |
|
|
| T |
39472089 |
agacggttatcacggttgattagaagcttcgcaaactcgagagcagaaactatatgaccctcagccggaaaagggacaaacaccacttctgctttcttca |
39471990 |
T |
|
| Q |
307 |
tcttgga |
313 |
Q |
| |
|
||||||| |
|
|
| T |
39471989 |
tcttgga |
39471983 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 7 - 307
Target Start/End: Complemental strand, 39454892 - 39454592
Alignment:
| Q |
7 |
tgaggttagagacggcttgtttgacgtttggtttgtgagcatcaaggagagcgttcattgcggaacctggatcagaggtttggggaagagaaacttctgg |
106 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||| ||||| |||||| ||||| ||| | |||| |||||| || | || |||||||||| |||||| |
|
|
| T |
39454892 |
tgaggttagatacggcttgtttgacgtttggtttctgagcttcaaggtgagcggacatggaggaaactggattagtgtttgggggaagagagcattctgg |
39454793 |
T |
|
| Q |
107 |
aaggttgatgatgttgagagaatctgagataggaagggatttagtgttgacatcattttctgatatgtgtgggaatttgataactaaaacagttactcgg |
206 |
Q |
| |
|
||||||||||||| || ||||| ||||| ||||| |||||| ||| |||||| |||| | |||||| ||||||| ||||||||||||| |||| |
|
|
| T |
39454792 |
aaggttgatgatgcggattgaatcggagattggaagagatttactgtatacatcagtttcagtggcgtgtggaaatttgaggactaaaacagttattcgg |
39454693 |
T |
|
| Q |
207 |
agacggttatcacgattgattagaagcttcgcgaattcaagggtggaaactagatggctcacaccaggaaaagggataaacaccacttctgctttcttca |
306 |
Q |
| |
|
|||||||||||||| ||||||||||| |||||||| |||||||||||||||| ||||| ||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
39454692 |
agacggttatcacggttgattagaagtttcgcgaactcaagggtggaaactaaatggccaacaccaggagaagggataaacaccacttctgctttcttca |
39454593 |
T |
|
| Q |
307 |
t |
307 |
Q |
| |
|
| |
|
|
| T |
39454592 |
t |
39454592 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 7 - 313
Target Start/End: Original strand, 39470673 - 39470979
Alignment:
| Q |
7 |
tgaggttagagacggcttgtttgacgtttggtttgtgagcatcaaggagagcgttcattgcggaacctggatcagaggtttggggaagagaaacttctgg |
106 |
Q |
| |
|
||||||| |||| |||||||||||||||| ||| ||||| || |||||||||||||| | |||||||||||||||||| || ||| |||||||||||| |
|
|
| T |
39470673 |
tgaggttggagatagcttgtttgacgtttgctttatgagcttcgaggagagcgttcatatccgaacctggatcagaggttgggagaacagaaacttctgg |
39470772 |
T |
|
| Q |
107 |
aaggttgatgatgttgagagaatctgagataggaagggatttagtgttgacatcattttctgatatgtgtgggaatttgataactaaaacagttactcgg |
206 |
Q |
| |
|
||||||||||| | ||||||||| ||||| |||| |||||||| || ||||||| ||||| ||||||||||||| || ||||| ||||||| || | |
|
|
| T |
39470773 |
aaggttgatgacatggagagaatcagagatgggaatggatttagcgtagacatcagattctgcagtgtgtgggaatttcatgactaagacagttattcag |
39470872 |
T |
|
| Q |
207 |
agacggttatcacgattgattagaagcttcgcgaattcaagggtggaaactagatggctcacaccaggaaaagggataaacaccacttctgctttcttca |
306 |
Q |
| |
|
|| ||||||||| | |||||||||||||| ||||| || | || ||||||||||| | ||| | ||||||||||||||||||||||| ||||||||| |
|
|
| T |
39470873 |
aggcggttatcatggttgattagaagcttggcgaactctaaggcagaaactagatgacctacagcgggaaaagggataaacaccacttccactttcttca |
39470972 |
T |
|
| Q |
307 |
tcttgga |
313 |
Q |
| |
|
| ||||| |
|
|
| T |
39470973 |
tgttgga |
39470979 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 7 - 313
Target Start/End: Complemental strand, 39460503 - 39460197
Alignment:
| Q |
7 |
tgaggttagagacggcttgtttgacgtttggtttgtgagcatcaaggagagcgttcattgcggaacctggatcagaggttt-ggggaagagaaacttctg |
105 |
Q |
| |
|
|||| ||||| ||||||||||||||||||| ||| ||||| || |||| ||| ||||| |||| ||| || || |||| |||||||||||||||||| |
|
|
| T |
39460503 |
tgagattagatacggcttgtttgacgtttgatttctgagcttcgaggaaagccatcattctggaagttggttc-gatgtttgggggaagagaaacttctg |
39460405 |
T |
|
| Q |
106 |
gaaggttgatgatgttgagagaatctgagataggaagggatttagtgttgacatcattttctgatatgtgtgggaatttgataactaaaacagttactcg |
205 |
Q |
| |
|
||||||||||||||| ||||||||| || | ||||| ||||||||||| ||||| ||||||| ||| ||||| ||| || |||| ||||| | ||| |
|
|
| T |
39460404 |
gaaggttgatgatgtcgagagaatcagaagtgggaagtgatttagtgttaacatcggattctgatgtgtatgggagtttcatgactaggacagtaattcg |
39460305 |
T |
|
| Q |
206 |
gagacggttatcacgattgattagaagcttcgcgaattcaagggtggaaactagatggctcacaccaggaaaagggataaacaccacttctgctttcttc |
305 |
Q |
| |
|
||| || |||||||| ||| |||||||||| ||||| |||||||||||| ||||||||||| ||| ||||||||||||||||| ||||||||||||||| |
|
|
| T |
39460304 |
gaggcgcttatcacggttggttagaagctttgcgaactcaagggtggaatctagatggctcggaccgggaaaagggataaacacaacttctgctttcttc |
39460205 |
T |
|
| Q |
306 |
atcttgga |
313 |
Q |
| |
|
|||||||| |
|
|
| T |
39460204 |
atcttgga |
39460197 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 7 - 314
Target Start/End: Complemental strand, 39486718 - 39486405
Alignment:
| Q |
7 |
tgaggttagagacggcttgtttgacgtttggtttgtgagcatcaaggagagcgttcattgcggaacctggatcagaggtttggggaagagaaacttctgg |
106 |
Q |
| |
|
||||||| || || |||||||||||||||||||| ||||| ||||||||||||||||| | ||| ||| || | | || ||||||||||| |||||| |
|
|
| T |
39486718 |
tgaggttggatacagcttgtttgacgtttggtttctgagcttcaaggagagcgttcatgacaaaacgtggttcggtgtttgggggaagagaacattctgg |
39486619 |
T |
|
| Q |
107 |
aaggttgatgatgttgagagaatctgagataggaagggatttagtgttgacatca------ttttctgatatgtgtgggaatttgataactaaaacagtt |
200 |
Q |
| |
|
||||||||||| | ||||||||| || || ||||||||||| |||| |||||| | |||| |||||||||||||||| || || | ||| |
|
|
| T |
39486618 |
aaggttgatgacctggagagaatcggaaatgggaagggattttgtgtagacatcgacatcgtcatctgtggtgtgtgggaatttgatgaccaagatggtt |
39486519 |
T |
|
| Q |
201 |
actcggagacggttatcacgattgattagaagcttcgcgaattcaagggtggaaactagatggctcacaccaggaaaagggataaacaccacttctgctt |
300 |
Q |
| |
|
| |||||||||||||||||| |||||||||||||| || ||||||||||||||||||||||| | |||||||| ||||||||| |||||||||||||| |
|
|
| T |
39486518 |
attcggagacggttatcacggttgattagaagctttgcaaattcaagggtggaaactagatgaccaacaccaggtgaagggataatcaccacttctgctt |
39486419 |
T |
|
| Q |
301 |
tcttcatcttggat |
314 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
39486418 |
tcttcatcttggat |
39486405 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 7 - 333
Target Start/End: Original strand, 39458210 - 39458536
Alignment:
| Q |
7 |
tgaggttagagacggcttgtttgacgtttggtttgtgagcatcaaggagagcgttcattgcggaacctggatcagaggtttggggaagagaaacttctgg |
106 |
Q |
| |
|
||||||| |||||||||| ||||||||||||||| ||||| | |||||| | ||| ||||| | || ||| || ||||||||||| |||||| |
|
|
| T |
39458210 |
tgaggttggagacggcttttttgacgtttggtttctgagctttgaggagatccaccatgccggaagttatattggagtttgggggaagagaacattctgg |
39458309 |
T |
|
| Q |
107 |
aaggttgatgatgttgagagaatctgagataggaagggatttagtgttgacatcattttctgatatgtgtgggaatttgataactaaaacagttactcgg |
206 |
Q |
| |
|
||||| || ||||| |||||||| ||| | |||||||||||||| |||||| |||||| | ||||||| ||||| || || || | ||||| |||| |
|
|
| T |
39458310 |
aaggtcgacaatgttaagagaatcgtcgatggcaagggatttagtgtagacatctatttctgttgtgtgtggaaatttcatgaccaagatagttattcgg |
39458409 |
T |
|
| Q |
207 |
agacggttatcacgattgattagaagcttcgcgaattcaagggtggaaactagatggctcacaccaggaaaagggataaacaccacttctgctttcttca |
306 |
Q |
| |
|
|||||||||||||| |||||||||||||| || ||||| ||||||||||||||||| | |||||||| ||| ||||| |||||||||||||||||||| |
|
|
| T |
39458410 |
agacggttatcacggttgattagaagctttgcaaattcgagggtggaaactagatgaccaacaccaggtgaagagataatcaccacttctgctttcttca |
39458509 |
T |
|
| Q |
307 |
tcttggatatacacttgatcagtgtga |
333 |
Q |
| |
|
|| ||||||| ||||| ||||||||| |
|
|
| T |
39458510 |
tcctggatatgcacttactcagtgtga |
39458536 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 192 - 333
Target Start/End: Complemental strand, 39480441 - 39480300
Alignment:
| Q |
192 |
aaaacagttactcggagacggttatcacgattgattagaagcttcgcgaattcaagggtggaaactagatggctcacaccaggaaaagggataaacacca |
291 |
Q |
| |
|
|||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| | |||||||| ||||||||| ||||| |
|
|
| T |
39480441 |
aaaacagttattcggagacggttatcacggttgattagaagcttcgcgaattcaagggtggaaactagatgaccaacaccaggtgaagggataatcacca |
39480342 |
T |
|
| Q |
292 |
cttctgctttcttcatcttggatatacacttgatcagtgtga |
333 |
Q |
| |
|
||||||||||||||||| ||||||| ||||| ||||||||| |
|
|
| T |
39480341 |
cttctgctttcttcatcctggatatgcacttactcagtgtga |
39480300 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #11
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 198 - 308
Target Start/End: Original strand, 43312620 - 43312730
Alignment:
| Q |
198 |
gttactcggagacggttatcacgattgattagaagcttcgcgaattcaagggtggaaactagatggctcacaccaggaaaagggataaacaccacttctg |
297 |
Q |
| |
|
||||| ||||||||||||||||| ||||| |||||||| || || ||||||||||| |||| ||| | |||||| ||| |||||||||||||||||||| |
|
|
| T |
43312620 |
gttacacggagacggttatcacggttgatgagaagcttagcaaactcaagggtggatactaaatgtcccacacctggagaagggataaacaccacttcta |
43312719 |
T |
|
| Q |
298 |
ctttcttcatc |
308 |
Q |
| |
|
|||||||||| |
|
|
| T |
43312720 |
gtttcttcatc |
43312730 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 7 - 159
Target Start/End: Complemental strand, 39483513 - 39483361
Alignment:
| Q |
7 |
tgaggttagagacggcttgtttgacgtttggtttgtgagcatcaaggagagcgttcattgcggaacctggatcagaggtttggggaagagaaacttctgg |
106 |
Q |
| |
|
||||||| ||||| |||||| | | ||||||||| ||||| |||||||||||||| || || ||| || |||| || || |||||||| || |||||| |
|
|
| T |
39483513 |
tgaggttggagacagcttgtattatgtttggtttctgagcttcaaggagagcgttgatggcagaaactagatcgaagtttgggggaagataacattctgg |
39483414 |
T |
|
| Q |
107 |
aaggttgatgatgttgagagaatctgagataggaagggatttagtgttgacat |
159 |
Q |
| |
|
||||||||| | || ||| |||| |||| ||||||||||||| || ||||| |
|
|
| T |
39483413 |
aaggttgattacattaagaaaatcaaagatgggaagggatttagggtagacat |
39483361 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University