View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12669_low_5 (Length: 353)
Name: NF12669_low_5
Description: NF12669
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12669_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 292; Significance: 1e-164; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 16 - 340
Target Start/End: Original strand, 56433722 - 56434045
Alignment:
| Q |
16 |
acatcaagaggcactgagacccaagataaaagacaaagcaaacttacataatgttgaagttcctgttgcaattgtttaaccaaaacatcactccatgtag |
115 |
Q |
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| T |
56433722 |
acatcaagaggcactgagacccaagataaaagacaaagcaaacttacataatgttgaagttcctgttgcaattgtttaaccaaaacatcactccatgtag |
56433821 |
T |
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| Q |
116 |
aagaaacttcctgggatgaaaaagttgctagcttcttttcagcttcagtcttctggtgcaaacactggaaataggaatcgtgattcatgatgtaaagcaa |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
56433822 |
aagaaacttcctgggatgaaaaagttgctagcttcttttcagcttcagtcttctggtgcaaacactggaaataggaatcgtgattcatgatgtaaagcaa |
56433921 |
T |
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| Q |
216 |
agaaagtaacccaatnnnnnnnngaaacatgaaagtgacaggaagcaagcaaatcaaattgaacattgcaaacctcattgaattggtccttgagacggtc |
315 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
56433922 |
agaaagtaacccaat-aaaaaaagaaacatgaaagtgacaggaagcaagcaaatcaaattgaacattgcaaacctcattgaattggtccttgagacggtc |
56434020 |
T |
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| Q |
316 |
caattgctctttaaacatctctgct |
340 |
Q |
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|||||||||||||| |||||||||| |
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| T |
56434021 |
caattgctctttaagcatctctgct |
56434045 |
T |
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