View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1266_high_12 (Length: 321)
Name: NF1266_high_12
Description: NF1266
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1266_high_12 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 205; Significance: 1e-112; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 7 - 286
Target Start/End: Original strand, 9736146 - 9736426
Alignment:
| Q |
7 |
ggagcagagattttactgggtgacaatcctctaatgtgatatttgtgatgcatatgatacattttatttgacacaacttcaacatttcctacaagagcac |
106 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||| |
|
|
| T |
9736146 |
ggagcagagattttactgggtgacaatcctctaatgtgatatttgtgatgcatatgatacattttatttgacacaacttcaacatttccaatcagagcac |
9736245 |
T |
|
| Q |
107 |
tttataagtatacccttattcagtaatacttagtagccttattagcttgaaaatttaaagtgttca-nnnnnnnnnccgcataagttgaaccaactaaag |
205 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||| |
|
|
| T |
9736246 |
tttataagtatacccttattcagtaatacttagtagccttattagcttgaaaatttaaagtattcatttttttttttcgcataagttgaaccaactaaag |
9736345 |
T |
|
| Q |
206 |
acatatgggagaagctnnnnnnnccaaatgatatggaattgtaagtgtaaattattgtttaaagataaaatatatatatac |
286 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9736346 |
acatatgggagaagctaaaaaaaccaaatgatatggaattgtaagtgtaaattattgtttaaagataaaatatatatatac |
9736426 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University