View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1266_high_15 (Length: 303)
Name: NF1266_high_15
Description: NF1266
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1266_high_15 |
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| [»] scaffold0888 (1 HSPs) |
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| [»] scaffold2125 (1 HSPs) |
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| [»] scaffold0149 (1 HSPs) |
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Alignment Details
Target: scaffold0888 (Bit Score: 213; Significance: 1e-117; HSPs: 1)
Name: scaffold0888
Description:
Target: scaffold0888; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 30 - 295
Target Start/End: Complemental strand, 2969 - 2704
Alignment:
| Q |
30 |
tatggaatattgcagcagagcatttgtgtactatcttcggtgtggaacctaatgataaatcatgttagcacatgatatattcacatccttatcagaatac |
129 |
Q |
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| T |
2969 |
tatggaatattgcagcagagcatttgtgtactatcttcggtgtggaacctaatgatgaatcatgttagcacatgatatattcacatccttatcagaatac |
2870 |
T |
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| Q |
130 |
attcacacacttgatctacacactttggtttgctaccagttgggcacatacttccttgacaatcagaatgattataacagtgataaaattctgtaatnnn |
229 |
Q |
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| T |
2869 |
attcacacacttgatctacacactttggtttgctaccagttgggcacatacttccttgacaatcagaatgattataacagtgataaaattctgtaataaa |
2770 |
T |
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| Q |
230 |
nnnnnnnnnnnnttgtaactaaaatgagataatatattgtgtacgaagtaaagaaggagaataatc |
295 |
Q |
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| T |
2769 |
aaaaatgaaaaattgtaactaaaatgagataatatattgtatacgaagtaaagaaggagaataatc |
2704 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 243 - 285
Target Start/End: Complemental strand, 668806 - 668764
Alignment:
| Q |
243 |
tgtaactaaaatgagataatatattgtgtacgaagtaaagaag |
285 |
Q |
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| T |
668806 |
tgtaactaaaatgagatactatattgtgtatgaagtaaagaag |
668764 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 243 - 285
Target Start/End: Original strand, 3400755 - 3400797
Alignment:
| Q |
243 |
tgtaactaaaatgagataatatattgtgtacgaagtaaagaag |
285 |
Q |
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| T |
3400755 |
tgtaactaaaatgggataatatattgtgtacgaggtagagaag |
3400797 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold2125 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold2125
Description:
Target: scaffold2125; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 243 - 285
Target Start/End: Complemental strand, 462 - 420
Alignment:
| Q |
243 |
tgtaactaaaatgagataatatattgtgtacgaagtaaagaag |
285 |
Q |
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| T |
462 |
tgtaactaaaatggaataatatattgcgtacgaagtaaagaag |
420 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0149 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0149
Description:
Target: scaffold0149; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 243 - 279
Target Start/End: Complemental strand, 25802 - 25766
Alignment:
| Q |
243 |
tgtaactaaaatgagataatatattgtgtacgaagta |
279 |
Q |
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||||||||||||||||||||||||| |||| |||||| |
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| T |
25802 |
tgtaactaaaatgagataatatattatgtatgaagta |
25766 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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