View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1266_high_23 (Length: 259)
Name: NF1266_high_23
Description: NF1266
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1266_high_23 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 203; Significance: 1e-111; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 1 - 230
Target Start/End: Original strand, 28461061 - 28461290
Alignment:
| Q |
1 |
cattggttagagttagttgttcaattagttattgtagttcaggtctataaataagactatcatgttctcaaattactatgttttgatcaatataattttc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28461061 |
cattggttagagttagttgttcaattagttattgtagttcaggtctctaaataagactatcatgttctcaaattactatgttttgatcaatataattttc |
28461160 |
T |
|
| Q |
101 |
tatgaattttacttccactcgtgttattaagttctttttatctcttttcttcttattctcaaaatcttaatagatatcatgaagtg-ttccatagttgga |
199 |
Q |
| |
|
||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
28461161 |
tatgaattttacttccacttgtgttattaagttc-ttttatctcttttcttcttattctcaaaatcttaatagatatcatgaagtgtttccatagttgga |
28461259 |
T |
|
| Q |
200 |
ttctcatttggtggaaaacatgagtggttgt |
230 |
Q |
| |
|
|||||||||||||||||||||||||| |||| |
|
|
| T |
28461260 |
ttctcatttggtggaaaacatgagtgattgt |
28461290 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 81 - 114
Target Start/End: Complemental strand, 3608781 - 3608748
Alignment:
| Q |
81 |
ttttgatcaatataattttctatgaattttactt |
114 |
Q |
| |
|
||||||||| |||||||||||||||||||||||| |
|
|
| T |
3608781 |
ttttgatcattataattttctatgaattttactt |
3608748 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 48; Significance: 2e-18; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 7 - 113
Target Start/End: Original strand, 39994923 - 39995030
Alignment:
| Q |
7 |
ttagagttagttgttcaattagttattgtagttcaggtctataaataagac-tatcatgttctcaaattactatgttttgatcaatataattttctatga |
105 |
Q |
| |
|
||||||||| ||| |||||||||| |||||| | ||||||||||||||| || ||| |||||||||| || ||||||||||||||||||||||||| |
|
|
| T |
39994923 |
ttagagttaattggtcaattagttcatgtagtcaaagtctataaataagacctactgtgtactcaaattaccatcttttgatcaatataattttctatga |
39995022 |
T |
|
| Q |
106 |
attttact |
113 |
Q |
| |
|
|||||||| |
|
|
| T |
39995023 |
attttact |
39995030 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 81 - 111
Target Start/End: Original strand, 34323829 - 34323859
Alignment:
| Q |
81 |
ttttgatcaatataattttctatgaatttta |
111 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
34323829 |
ttttgatcaatataattttctatgaatttta |
34323859 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 44 - 172
Target Start/End: Complemental strand, 36572323 - 36572193
Alignment:
| Q |
44 |
tctataaataagactatcatgttctcaaattactatgttttgatcaatataattttctatgaattttacttccactcgtgttattaagttctttttatc- |
142 |
Q |
| |
|
|||||||||| || || |||| | ||||| ||||| |||||||||||||||||||| || |||||||||| |||| | ||||| || || ||||||| |
|
|
| T |
36572323 |
tctataaatatgagtactatgtacacaaatcactatcttttgatcaatataattttcaataaattttactttcacttgagttataaaactc-ttttatcg |
36572225 |
T |
|
| Q |
143 |
--tcttttcttcttattctcaaaatcttaata |
172 |
Q |
| |
|
| |||||||||||| ||||||||||||||| |
|
|
| T |
36572224 |
ttttttttcttcttatactcaaaatcttaata |
36572193 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 52 - 148
Target Start/End: Original strand, 31989374 - 31989469
Alignment:
| Q |
52 |
taagactatcatgttctcaaattactatgttttgatcaatataattttctatgaattttacttccactcgtgttattaagttctttttatctctttt |
148 |
Q |
| |
|
|||||||| ||||| ||||||| || || |||||||| ||||||||||||| ||| |||||| || | | | ||||||| || ||||||||||||| |
|
|
| T |
31989374 |
taagactaccatgtactcaaatcaccatcttttgatcggtataattttctataaatattactttcatttgagctattaagctc-ttttatctctttt |
31989469 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University