View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1266_high_24 (Length: 257)
Name: NF1266_high_24
Description: NF1266
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1266_high_24 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 225; Significance: 1e-124; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 29 - 257
Target Start/End: Original strand, 54001835 - 54002063
Alignment:
| Q |
29 |
atcatccctcaattccatgcttatcttttaagcaattgccaagtctttggtttgcattctgttttgaataatagttatgaaaatactaatttggcaaaaa |
128 |
Q |
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| T |
54001835 |
atcatccctcaattccatgcttatcttttaagcaattgccaagtctttggtttgcattctgttttgaataatagttatgaaaatactaatttggcaaaaa |
54001934 |
T |
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| Q |
129 |
acaacaaaatctagaacaataagcattttgcaaattattggtgtaaacatctgaatttgaaattaaaacagaaaattaaccaatatactttcttatctga |
228 |
Q |
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| T |
54001935 |
acaacaaaatctagaacaataagcattttgcaaattattggtgtaaacatctgaatttgaaattaaaacagaaaattaaccaatatactttcatatctga |
54002034 |
T |
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| Q |
229 |
tcaagaagaattccatgtccagtttatct |
257 |
Q |
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| T |
54002035 |
tcaagaagaattccatgtccagtttatct |
54002063 |
T |
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